Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d012296_P001 | |
| Zm00001d042779_P001 | |
| Zm00001d048085_P002 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EER92642 | Sorghum | nucleus | 77.61 | 77.41 |
| Solyc02g066850.1.1 | Tomato | cytosol | 9.92 | 59.09 |
| Bra027018.1-P | Field mustard | cytosol | 7.12 | 47.46 |
| Solyc06g083290.1.1 | Tomato | cytosol, extracellular, plastid | 8.14 | 47.06 |
| Os03t0214200-01 | Rice | nucleus | 42.75 | 41.9 |
| HORVU4Hr1G035770.1 | Barley | plastid | 10.94 | 38.74 |
| CDY00093 | Canola | nucleus | 24.17 | 37.4 |
| Bra036210.1-P | Field mustard | nucleus | 24.17 | 37.25 |
| CDY19988 | Canola | nucleus | 24.17 | 37.25 |
| AT3G29575.1 | Thale cress | nucleus | 21.88 | 37.23 |
| CDY36406 | Canola | nucleus | 26.97 | 36.3 |
| CDY44386 | Canola | nucleus | 23.16 | 36.26 |
| CDY04085 | Canola | nucleus | 22.65 | 35.74 |
| Zm00001d047290_P001 | Maize | nucleus | 25.95 | 35.42 |
| GSMUA_Achr3P30390_001 | Banana | nucleus | 29.77 | 35.35 |
| CDY16104 | Canola | nucleus | 27.74 | 35.28 |
| GSMUA_Achr4P14370_001 | Banana | nucleus | 30.03 | 35.22 |
| Zm00001d029529_P001 | Maize | nucleus | 25.95 | 35.05 |
| Bra025400.1-P | Field mustard | nucleus | 23.16 | 34.08 |
| CDX86364 | Canola | nucleus | 23.16 | 34.08 |
| Bra026891.1-P | Field mustard | nucleus | 26.72 | 33.98 |
| CDY33807 | Canola | nucleus | 26.72 | 33.98 |
| CDX85274 | Canola | nucleus | 22.9 | 33.96 |
| Zm00001d022069_P001 | Maize | nucleus | 26.46 | 33.88 |
| PGSC0003DMT400036544 | Potato | cytosol | 10.94 | 33.86 |
| TraesCS4A01G058100.1 | Wheat | nucleus | 20.87 | 33.33 |
| TraesCS3B01G594200.1 | Wheat | cytosol | 19.08 | 33.19 |
| TraesCS3D01G532000.1 | Wheat | nucleus | 13.99 | 32.35 |
| TraesCS4D01G246400.1 | Wheat | nucleus | 32.57 | 32.32 |
| HORVU4Hr1G067930.1 | Barley | nucleus | 33.08 | 32.18 |
| Bra019706.1-P | Field mustard | nucleus | 25.7 | 31.96 |
| TraesCS4B01G246800.1 | Wheat | nucleus | 19.59 | 31.82 |
| Bra004004.1-P | Field mustard | nucleus | 27.99 | 31.79 |
| CDY07354 | Canola | nucleus | 27.99 | 31.7 |
| Bra033105.1-P | Field mustard | nucleus | 17.56 | 31.65 |
| CDX98125 | Canola | nucleus | 25.45 | 31.35 |
| GSMUA_Achr7P26660_001 | Banana | nucleus | 27.99 | 31.16 |
| Solyc02g030650.1.1 | Tomato | nucleus | 14.25 | 31.11 |
| TraesCS4B01G247000.1 | Wheat | nucleus | 31.3 | 31.06 |
| PGSC0003DMT400089614 | Potato | cytosol | 10.69 | 30.88 |
| Solyc02g032680.1.1 | Tomato | cytosol | 9.41 | 30.83 |
| CDX74273 | Canola | mitochondrion | 21.37 | 30.77 |
| Solyc02g032140.1.1 | Tomato | cytosol | 9.67 | 30.65 |
| CDY04272 | Canola | nucleus | 26.97 | 30.64 |
| Solyc02g066870.1.1 | Tomato | cytosol | 12.21 | 30.57 |
| Bra001031.1-P | Field mustard | mitochondrion | 21.12 | 30.4 |
| Solyc02g032710.1.1 | Tomato | cytosol | 10.43 | 30.37 |
| VIT_01s0011g00410.t01 | Wine grape | nucleus | 27.74 | 30.28 |
| PGSC0003DMT400003712 | Potato | nucleus | 23.92 | 29.94 |
| GSMUA_Achr3P15940_001 | Banana | nucleus | 26.46 | 29.8 |
| Solyc02g088910.2.1 | Tomato | nucleus | 23.92 | 29.65 |
| CDY68672 | Canola | cytosol, mitochondrion, nucleus, plastid | 20.61 | 29.35 |
| Bra039157.1-P | Field mustard | cytosol | 20.61 | 29.24 |
| TraesCS4D01G246100.2 | Wheat | nucleus | 18.58 | 29.08 |
| AT1G69260.1 | Thale cress | nucleus | 25.45 | 28.99 |
| CDX91976 | Canola | mitochondrion | 20.87 | 28.77 |
| AT1G13740.1 | Thale cress | nucleus | 25.45 | 28.74 |
| GSMUA_Achr6P27430_001 | Banana | nucleus | 25.95 | 28.73 |
| CDY43256 | Canola | mitochondrion | 20.36 | 28.57 |
| KRH75067 | Soybean | nucleus | 29.52 | 28.5 |
| KRH70923 | Soybean | nucleus | 29.77 | 28.47 |
| Bra004368.1-P | Field mustard | nucleus | 23.41 | 28.22 |
| Solyc02g032690.1.1 | Tomato | cytosol | 17.05 | 27.92 |
| VIT_14s0068g00300.t01 | Wine grape | nucleus | 27.48 | 27.91 |
| Solyc02g066860.1.1 | Tomato | cytosol | 9.16 | 27.69 |
| CDX95951 | Canola | nucleus | 23.66 | 27.68 |
| PGSC0003DMT400095238 | Potato | cytosol, mitochondrion | 8.91 | 27.56 |
| Solyc02g030610.1.1 | Tomato | cytosol | 10.94 | 26.88 |
| CDY40905 | Canola | nucleus | 23.66 | 26.65 |
| Solyc04g005380.2.1 | Tomato | nucleus | 25.7 | 26.3 |
| PGSC0003DMT400045906 | Potato | nucleus | 25.95 | 26.29 |
| KRH01286 | Soybean | nucleus | 25.19 | 26.26 |
| PGSC0003DMT400072760 | Potato | nucleus | 26.97 | 25.79 |
| KRH54707 | Soybean | nucleus | 16.29 | 25.7 |
| KRH63223 | Soybean | nucleus | 16.79 | 25.38 |
| KRH45047 | Soybean | nucleus | 24.43 | 25.07 |
| GSMUA_Achr9P07070_001 | Banana | mitochondrion | 26.97 | 24.88 |
| TraesCS4A01G057800.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 32.32 | 24.85 |
| AT3G02140.1 | Thale cress | cytosol | 20.1 | 24.76 |
| Solyc02g030630.1.1 | Tomato | cytosol | 18.83 | 24.18 |
| Solyc02g032670.1.1 | Tomato | cytosol | 15.78 | 23.66 |
| Solyc02g030620.1.1 | Tomato | cytosol | 17.56 | 23.31 |
| CDY08008 | Canola | cytosol | 16.79 | 23.0 |
| PGSC0003DMT400051959 | Potato | nucleus | 15.01 | 22.96 |
| Bra001242.1-P | Field mustard | nucleus | 16.79 | 22.92 |
| CDX74054 | Canola | nucleus | 16.54 | 22.57 |
| Solyc05g012210.2.1 | Tomato | extracellular, golgi | 26.46 | 22.46 |
| Bra040367.1-P | Field mustard | nucleus | 15.78 | 22.22 |
| CDY34910 | Canola | peroxisome | 15.52 | 21.86 |
| Solyc02g066900.1.1 | Tomato | cytosol | 17.56 | 21.77 |
| KRH66123 | Soybean | nucleus | 19.59 | 21.75 |
| AT3G07255.1 | Thale cress | nucleus | 15.78 | 21.16 |
| VIT_00s0216g00060.t01 | Wine grape | nucleus | 18.83 | 20.67 |
| KRH56804 | Soybean | nucleus | 14.25 | 19.86 |
| Solyc01g058740.2.1 | Tomato | cytosol | 3.56 | 19.72 |
| KRH07456 | Soybean | nucleus | 17.56 | 19.71 |
| Solyc02g066840.1.1 | Tomato | cytosol | 7.38 | 19.33 |
| Solyc02g066890.1.1 | Tomato | cytosol | 17.56 | 19.22 |
| KRH03141 | Soybean | nucleus | 10.69 | 17.87 |
| Solyc02g032720.1.1 | Tomato | cytosol | 16.54 | 17.57 |
| VIT_17s0000g05280.t01 | Wine grape | nucleus | 16.54 | 15.22 |
| PGSC0003DMT400091590 | Potato | cytosol | 15.52 | 14.95 |
| PGSC0003DMT400036545 | Potato | nucleus | 17.56 | 14.11 |
| Solyc02g030600.1.1 | Tomato | cytosol | 7.12 | 13.4 |
Protein Annotations
| EntrezGene:100192929 | MapMan:15.5.53.3 | UniProt:A0A1Q1D560 | ProteinID:AQL08655.1 | UniProt:B4FAF3 | EMBL:BT034091 |
| EMBL:BT035045 | ncoils:Coil | EMBL:EU966492 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0009987 | InterPro:Jas |
| InterPro:NINJA_B | InterPro:Ninja_fam | InterPro:Ninja_motif | PFAM:PF07897 | PFAM:PF16135 | PFAM:PF16136 |
| PANTHER:PTHR31413 | PANTHER:PTHR31413:SF5 | UniParc:UPI00017B630E | EnsemblPlantsGene:Zm00001d048085 | EnsemblPlants:Zm00001d048085_P002 | EnsemblPlants:Zm00001d048085_T002 |
| SEG:seg | : | : | : | : | : |
Description
Ninja-family protein 1
Coordinates
chr9:+:149821917..149824839
Molecular Weight (calculated)
41521.3 Da
IEP (calculated)
9.221
GRAVY (calculated)
-0.464
Length
393 amino acids
Sequence
(BLAST)
(BLAST)
001: MEGFSRDLLC GIGKGDAPPP EKRPGQLREE MEEVELSLGL SLGGRFGLDR KGSKLPRSSS VAAMLTTPVE VPAPPSLSRA SSLPVQAEAS EVERKQGLDG
101: WGSCREGGGL GVQHAARLPA SGNPSSASSV GEGQILQGTL MRTSSLPAVI EASGNDDWKK RKEAQSLKRL EVKKKRIERR NSLACNTSKE AAGQSPKEMN
201: ANTDKLVSSD ETIVSANESH SSGKHLVKGL PPKYQATITS EDSSSAMRKK PNSAFKGTAI TEEQNSSSSV PSSGEAISSV TAPSLPLLSL VPITATLGSR
301: EDQSILGRAG ARANGMGDVE RRMMQEMPGV FTKGLSNGSR VEGFLYKYSK GEVRIVCICH GSFLTPSEFV EHAGAGKVDN PLRHIVVSAT PNL
101: WGSCREGGGL GVQHAARLPA SGNPSSASSV GEGQILQGTL MRTSSLPAVI EASGNDDWKK RKEAQSLKRL EVKKKRIERR NSLACNTSKE AAGQSPKEMN
201: ANTDKLVSSD ETIVSANESH SSGKHLVKGL PPKYQATITS EDSSSAMRKK PNSAFKGTAI TEEQNSSSSV PSSGEAISSV TAPSLPLLSL VPITATLGSR
301: EDQSILGRAG ARANGMGDVE RRMMQEMPGV FTKGLSNGSR VEGFLYKYSK GEVRIVCICH GSFLTPSEFV EHAGAGKVDN PLRHIVVSAT PNL
001: MGEASRQQRA WNREMTVTTN LSLDIDKYPR DLLRGFMSEN GGGRVFHGGE TNCDDESTIE LNLGLSLGGR FGVDKTPRKL KRSSSVLDTV PFNDSTVAEP
101: ENYTVGLERT TSLPAEMEEE WRKRKEMQSL RRMEAKRRRC EKQSFRVGNS DDQTVSFENE RWVTASKSGF LQRHLVSSNR QVCGVDSDGG GATGGGSSSS
201: LSELDNKNQQ GSSNSCNDER SPKIVAGCSS NSGSQGTERP SVTRANKVNE NENEKRVRSE DSVDRKGKGM ATSTGLVDMP CVFTKGDGPN GRRVDGILYK
301: YGKGEEVRIM CICHGSFLTP AEFVKHGGGG DVDRPLRHIV VNTSSSTF
101: ENYTVGLERT TSLPAEMEEE WRKRKEMQSL RRMEAKRRRC EKQSFRVGNS DDQTVSFENE RWVTASKSGF LQRHLVSSNR QVCGVDSDGG GATGGGSSSS
201: LSELDNKNQQ GSSNSCNDER SPKIVAGCSS NSGSQGTERP SVTRANKVNE NENEKRVRSE DSVDRKGKGM ATSTGLVDMP CVFTKGDGPN GRRVDGILYK
301: YGKGEEVRIM CICHGSFLTP AEFVKHGGGG DVDRPLRHIV VNTSSSTF
Arabidopsis Description
AFP2AFP2 [Source:UniProtKB/TrEMBL;Acc:A0A178WBB1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.