Factsheet for GSMUA_Achr6P27430_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus, plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P32830_001	Banana	nucleus	22.25	58.09
GSMUA_Achr3P15940_001	Banana	nucleus	45.63	46.42
GSMUA_Achr9P07070_001	Banana	mitochondrion	54.37	45.31
GSMUA_Achr4P14370_001	Banana	nucleus	39.44	41.79
GSMUA_Achr3P30390_001	Banana	nucleus	38.03	40.79
GSMUA_Achr5P01470_001	Banana	nucleus	32.39	40.07
GSMUA_Achr7P26660_001	Banana	nucleus	38.31	38.53
GSMUA_Achr9P09330_001	Banana	nucleus	35.21	36.98
HORVU4Hr1G035770.1	Barley	plastid	11.55	36.94
GSMUA_Achr6P34980_001	Banana	cytosol	27.32	34.28
TraesCS3D01G532000.1	Wheat	nucleus	15.49	32.35
Os03t0214200-01	Rice	nucleus	35.49	31.42
TraesCS3B01G594200.1	Wheat	cytosol	19.44	30.53
EER89528	Sorghum	nucleus	29.01	28.85
EER92642	Sorghum	nucleus	30.7	27.66
TraesCS4D01G246400.1	Wheat	nucleus	30.7	27.53
TraesCS4B01G247000.1	Wheat	nucleus	29.58	26.52
TraesCS4B01G246800.1	Wheat	nucleus	18.03	26.45
TraesCS4A01G058100.1	Wheat	nucleus	18.03	26.02
HORVU4Hr1G067930.1	Barley	nucleus	29.58	25.99
Zm00001d048085_P002	Maize	nucleus	28.73	25.95
TraesCS4D01G246100.2	Wheat	nucleus	18.03	25.5
TraesCS4A01G057800.1	Wheat	cytosol, mitochondrion, nucleus, plastid	30.7	21.33

Protein Annotations

EnsemblPlants:GSMUA_Achr6P27430_001	EnsemblPlants:GSMUA_Achr6T27430_001	EnsemblPlantsGene:GSMUA_Achr6G27430_001	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150
GO:GO:0009987	InterPro:Jas	InterPro:NINJA_B	InterPro:Ninja_fam	InterPro:Ninja_motif	ncoils:Coil
PANTHER:PTHR31413	PANTHER:PTHR31413:SF6	PFAM:PF07897	PFAM:PF16135	PFAM:PF16136	SEG:seg
UniParc:UPI00029575FE	UniProt:M0TAN8	MapMan:15.5.53.3	:	:	:

Description

Putative Ninja-family protein 3 [Source:GMGC_GENE;Acc:GSMUA_Achr6G27430_001]

Coordinates

chr6:+:27957460..27960100

Molecular Weight (calculated)

38637.4 Da

IEP (calculated)

10.000

GRAVY (calculated)

-0.467

Length

355 amino acids

Sequence
(BLAST)

001: MEVELVKGEA ELERQSSVIE SFPRDLLRRL SGNNCFNEQR EVPSGESDEV ELNLNLGLSL GGCLGVDPRG KKLIRSSSIA SFSSLPWEHE FSPGTPTMVR
101: TSSLPTETEE KRRKMKELQG LRRLEAKRKR LEKRKSIKSC NPKSDVGMDG GKSLAQPCTV NGRLSLPIGS QFSGLFSVAT PPGLRPWTSG SKITAAQGSE
201: LENQTPARGL FNLPAFSSNA DFNDTATVQS VSAHKTAIAP LVSGARITIT PIGGEEDPLE KKKKKVRVTR DASLGRNMIG EMPCVSTRGD GPNGRRIEGF
301: LYKYKKGEEV RIVCVCHGSF LTPAEFVKHA GGGDVTHPLR HIVVNPMPSA LMSLR

Best Arabidopsis Sequence Match ( AT1G69260.1 )
(BLAST)

001: MAEANERSKE MARSNSCVFP RDLLQRFISN SVEGEDDDEE EDDDEIELNL GLSLGGRFGV DKSNKLVRSS SVVVTMPLFR EDHHHHQAAA MITTKVSTET
101: VAGATRGTGL MRTTSLPAES EEEWRKRKEM QTLRRMAAKR RRSEKLRTGV GGGNSNNPEE AATATASRRR GRPSSGLPRW SATANKSGLL RQHSAGLDSL
201: QVSGESLGGG RAAGSSSSVS ELETKASSDE ARSLPSTTQP QQETTTKPTN RLRRLSSVDM NMKMEPQGKG KSEMPCVFTK GDGPNGKRVD GILYRYGSGE
301: EVRIMCVCHG DFLSPADFVK HAGGPHVDHP LRHIVVNTSS PSNLL

Arabidopsis Description

AFP1Ninja-family protein AFP1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LQ98]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.