Factsheet for GSMUA_Achr3P30390_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P14370_001	Banana	nucleus	59.21	58.51
GSMUA_Achr7P26660_001	Banana	nucleus	59.52	55.81
GSMUA_Achr4P32830_001	Banana	nucleus	22.66	55.15
GSMUA_Achr3P15940_001	Banana	nucleus	42.9	40.69
GSMUA_Achr9P09330_001	Banana	nucleus	40.48	39.65
HORVU4Hr1G035770.1	Barley	plastid	13.29	39.64
GSMUA_Achr5P01470_001	Banana	nucleus	34.14	39.37
GSMUA_Achr6P27430_001	Banana	nucleus	40.79	38.03
Os03t0214200-01	Rice	nucleus	41.99	34.66
GSMUA_Achr6P34980_001	Banana	cytosol	29.31	34.28
TraesCS3D01G532000.1	Wheat	nucleus	17.52	34.12
GSMUA_Achr9P07070_001	Banana	mitochondrion	41.09	31.92
TraesCS3B01G594200.1	Wheat	cytosol	21.75	31.86
EER89528	Sorghum	nucleus	34.14	31.65
EER92642	Sorghum	nucleus	37.16	31.22
TraesCS4A01G058100.1	Wheat	nucleus	22.66	30.49
Zm00001d048085_P002	Maize	nucleus	35.35	29.77
TraesCS4B01G246800.1	Wheat	nucleus	21.45	29.34
TraesCS4D01G246100.2	Wheat	nucleus	21.75	28.69
TraesCS4B01G247000.1	Wheat	nucleus	33.84	28.28
TraesCS4D01G246400.1	Wheat	nucleus	33.84	28.28
HORVU4Hr1G067930.1	Barley	nucleus	34.14	27.97
TraesCS4A01G057800.1	Wheat	cytosol, mitochondrion, nucleus, plastid	35.35	22.9

Protein Annotations

MapMan:15.5.53.3	ncoils:Coil	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0009987
EnsemblPlantsGene:GSMUA_Achr3G30390_001	EnsemblPlants:GSMUA_Achr3P30390_001	EnsemblPlants:GSMUA_Achr3T30390_001	InterPro:Jas	UniProt:M0SJ53	InterPro:NINJA_B
InterPro:Ninja_fam	InterPro:Ninja_motif	PFAM:PF07897	PFAM:PF16135	PFAM:PF16136	PANTHER:PTHR31413
PANTHER:PTHR31413:SF6	UniParc:UPI00029490A8	SEG:seg	:	:	:

Description

Putative Ninja-family protein 5 [Source:GMGC_GENE;Acc:GSMUA_Achr3G30390_001]

Coordinates

chr3:-:29152494..29154075

Molecular Weight (calculated)

35209.6 Da

IEP (calculated)

8.492

GRAVY (calculated)

-0.503

Length

331 amino acids

Sequence
(BLAST)

001: MDSLSRDFLR SFAGNGYGDE PLEATEGESD EIELSLGLSL GGCFGVDPKG KKLVRSSSIA SFSSLNTERG FRATHAAAAL TRTSSLPVEV EEERQKRKEV
101: QSLRRLEAKR KRLERRNSIR SGAAKPGEKP NEDVNGGKES PAVAAEQMAA DNGQLGSLGG ARNGFPPPGL PSGPAAWKRA ADMAGCFPPI SQGSIGSQGS
201: CSTGACGVDG RPPQAHHIGF AFSSFPTCLV TETKNSVRGD EEQVVAGRAN GVKEMERRMM EKMPFVSTKG DGPNGRRIEG FLYKYGRGEE VRIVCVCHGS
301: FLTPAEFVKH AGGGDVANPL RHIVVNSSPF L

Best Arabidopsis Sequence Match ( AT1G13740.1 )
(BLAST)

001: MGEASRQQRA WNREMTVTTN LSLDIDKYPR DLLRGFMSEN GGGRVFHGGE TNCDDESTIE LNLGLSLGGR FGVDKTPRKL KRSSSVLDTV PFNDSTVAEP
101: ENYTVGLERT TSLPAEMEEE WRKRKEMQSL RRMEAKRRRC EKQSFRVGNS DDQTVSFENE RWVTASKSGF LQRHLVSSNR QVCGVDSDGG GATGGGSSSS
201: LSELDNKNQQ GSSNSCNDER SPKIVAGCSS NSGSQGTERP SVTRANKVNE NENEKRVRSE DSVDRKGKGM ATSTGLVDMP CVFTKGDGPN GRRVDGILYK
301: YGKGEEVRIM CICHGSFLTP AEFVKHGGGG DVDRPLRHIV VNTSSSTF

Arabidopsis Description

AFP2AFP2 [Source:UniProtKB/TrEMBL;Acc:A0A178WBB1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.