Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 2
- plastid 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4B01G247000.1 | Wheat | nucleus | 70.65 | 91.16 |
| TraesCS4D01G246400.1 | Wheat | nucleus | 65.36 | 84.34 |
| HORVU4Hr1G067930.1 | Barley | nucleus | 50.49 | 63.86 |
| Solyc02g066850.1.1 | Tomato | cytosol | 7.05 | 54.55 |
| Solyc06g083290.1.1 | Tomato | cytosol, extracellular, plastid | 6.65 | 50.0 |
| Bra027018.1-P | Field mustard | cytosol | 5.68 | 49.15 |
| AT3G29575.1 | Thale cress | nucleus | 17.61 | 38.96 |
| CDY00093 | Canola | nucleus | 18.79 | 37.8 |
| Bra036210.1-P | Field mustard | nucleus | 18.79 | 37.65 |
| CDY19988 | Canola | nucleus | 18.79 | 37.65 |
| Os03t0214200-01 | Rice | nucleus | 28.96 | 36.91 |
| TraesCS4A01G058100.1 | Wheat | nucleus | 17.61 | 36.59 |
| Bra025400.1-P | Field mustard | nucleus | 18.98 | 36.33 |
| CDX86364 | Canola | nucleus | 18.98 | 36.33 |
| CDX85274 | Canola | nucleus | 18.79 | 36.23 |
| CDY44386 | Canola | nucleus | 17.42 | 35.46 |
| GSMUA_Achr3P30390_001 | Banana | nucleus | 22.9 | 35.35 |
| CDY04085 | Canola | nucleus | 17.22 | 35.34 |
| GSMUA_Achr4P14370_001 | Banana | nucleus | 22.9 | 34.93 |
| CDY33807 | Canola | nucleus | 20.55 | 33.98 |
| Bra026891.1-P | Field mustard | nucleus | 20.55 | 33.98 |
| CDY16104 | Canola | nucleus | 20.16 | 33.33 |
| EER92642 | Sorghum | nucleus | 25.44 | 32.99 |
| TraesCS2A01G176300.1 | Wheat | nucleus | 19.96 | 32.38 |
| Zm00001d048085_P002 | Maize | nucleus | 24.85 | 32.32 |
| PGSC0003DMT400036544 | Potato | cytosol | 8.02 | 32.28 |
| GSMUA_Achr7P26660_001 | Banana | nucleus | 21.72 | 31.44 |
| CDY36406 | Canola | nucleus | 17.81 | 31.16 |
| Bra004004.1-P | Field mustard | nucleus | 20.94 | 30.92 |
| Solyc02g088910.2.1 | Tomato | nucleus | 19.18 | 30.91 |
| PGSC0003DMT400003712 | Potato | nucleus | 18.98 | 30.89 |
| GSMUA_Achr6P27430_001 | Banana | nucleus | 21.33 | 30.7 |
| CDY07354 | Canola | nucleus | 20.74 | 30.55 |
| Solyc02g032710.1.1 | Tomato | cytosol | 8.02 | 30.37 |
| EER89528 | Sorghum | nucleus | 21.14 | 30.25 |
| Bra019706.1-P | Field mustard | nucleus | 18.59 | 30.06 |
| GSMUA_Achr3P15940_001 | Banana | nucleus | 20.35 | 29.8 |
| CDY04272 | Canola | nucleus | 20.16 | 29.77 |
| CDX98125 | Canola | nucleus | 18.4 | 29.47 |
| Bra033105.1-P | Field mustard | nucleus | 12.52 | 29.36 |
| CDX74273 | Canola | mitochondrion | 15.66 | 29.3 |
| AT1G69260.1 | Thale cress | nucleus | 19.57 | 28.99 |
| CDY68672 | Canola | cytosol, mitochondrion, nucleus, plastid | 15.66 | 28.99 |
| VIT_01s0011g00410.t01 | Wine grape | nucleus | 20.35 | 28.89 |
| Bra039157.1-P | Field mustard | cytosol | 15.66 | 28.88 |
| AT1G13740.1 | Thale cress | nucleus | 19.57 | 28.74 |
| Solyc02g066860.1.1 | Tomato | cytosol | 7.24 | 28.46 |
| Solyc02g032680.1.1 | Tomato | cytosol | 6.65 | 28.33 |
| KRH54707 | Soybean | nucleus | 13.7 | 28.11 |
| PGSC0003DMT400045906 | Potato | nucleus | 21.33 | 28.09 |
| CDY43256 | Canola | mitochondrion | 15.26 | 27.86 |
| Bra001031.1-P | Field mustard | mitochondrion | 14.87 | 27.84 |
| Solyc02g030650.1.1 | Tomato | nucleus | 9.78 | 27.78 |
| Solyc02g032140.1.1 | Tomato | cytosol | 6.65 | 27.42 |
| Solyc02g066870.1.1 | Tomato | cytosol | 8.41 | 27.39 |
| CDX91976 | Canola | mitochondrion | 15.26 | 27.37 |
| Bra004368.1-P | Field mustard | nucleus | 17.42 | 27.3 |
| KRH75067 | Soybean | nucleus | 21.72 | 27.27 |
| CDY40905 | Canola | nucleus | 18.59 | 27.22 |
| KRH63223 | Soybean | nucleus | 13.7 | 26.92 |
| KRH01286 | Soybean | nucleus | 19.77 | 26.79 |
| KRH70923 | Soybean | nucleus | 21.33 | 26.52 |
| CDX95951 | Canola | nucleus | 17.42 | 26.49 |
| KRH45047 | Soybean | nucleus | 19.77 | 26.37 |
| Solyc04g005380.2.1 | Tomato | nucleus | 19.77 | 26.3 |
| PGSC0003DMT400072760 | Potato | nucleus | 21.14 | 26.28 |
| VIT_14s0068g00300.t01 | Wine grape | nucleus | 19.77 | 26.1 |
| Solyc02g032690.1.1 | Tomato | cytosol | 12.13 | 25.83 |
| GSMUA_Achr9P07070_001 | Banana | mitochondrion | 21.53 | 25.82 |
| PGSC0003DMT400089614 | Potato | cytosol | 6.85 | 25.74 |
| Solyc02g030610.1.1 | Tomato | cytosol | 8.02 | 25.62 |
| Solyc02g032670.1.1 | Tomato | cytosol | 12.13 | 23.66 |
| PGSC0003DMT400095238 | Potato | cytosol, mitochondrion | 5.87 | 23.62 |
| AT3G02140.1 | Thale cress | cytosol | 14.68 | 23.51 |
| Solyc02g030620.1.1 | Tomato | cytosol | 13.5 | 23.31 |
| Solyc05g012210.2.1 | Tomato | extracellular, golgi | 20.74 | 22.89 |
| KRH56804 | Soybean | nucleus | 12.13 | 21.99 |
| Solyc02g030630.1.1 | Tomato | cytosol | 12.92 | 21.57 |
| CDY34910 | Canola | peroxisome | 11.74 | 21.51 |
| Bra040367.1-P | Field mustard | nucleus | 11.55 | 21.15 |
| PGSC0003DMT400051959 | Potato | nucleus | 10.57 | 21.01 |
| CDY08008 | Canola | cytosol | 11.55 | 20.56 |
| KRH03141 | Soybean | nucleus | 9.39 | 20.43 |
| AT3G07255.1 | Thale cress | nucleus | 11.55 | 20.14 |
| VIT_00s0216g00060.t01 | Wine grape | nucleus | 14.09 | 20.11 |
| CDX74054 | Canola | nucleus | 11.15 | 19.79 |
| Bra001242.1-P | Field mustard | nucleus | 11.15 | 19.79 |
| Solyc01g058740.2.1 | Tomato | cytosol | 2.74 | 19.72 |
| Solyc02g066890.1.1 | Tomato | cytosol | 13.7 | 19.5 |
| Solyc02g066900.1.1 | Tomato | cytosol | 11.74 | 18.93 |
| KRH66123 | Soybean | nucleus | 13.11 | 18.93 |
| Solyc02g066840.1.1 | Tomato | cytosol | 5.48 | 18.67 |
| KRH07456 | Soybean | nucleus | 12.52 | 18.29 |
| Solyc02g032720.1.1 | Tomato | cytosol | 12.92 | 17.84 |
| PGSC0003DMT400091590 | Potato | cytosol | 12.52 | 15.69 |
| VIT_17s0000g05280.t01 | Wine grape | nucleus | 12.33 | 14.75 |
| PGSC0003DMT400036545 | Potato | nucleus | 13.7 | 14.31 |
| Solyc02g030600.1.1 | Tomato | cytosol | 5.09 | 12.44 |
Protein Annotations
| EnsemblPlants:TraesCS4A01G057800.1 | EnsemblPlantsGene:TraesCS4A01G057800 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0009987 |
| InterPro:Jas | InterPro:NINJA_B | InterPro:Ninja_fam | InterPro:Ninja_motif | PANTHER:PTHR31413 | PFAM:PF07897 |
| PFAM:PF16135 | PFAM:PF16136 | SEG:seg | MapMan:15.5.53.3 | : | : |
Description
No Description!
Coordinates
chr4A:+:48521779..48528841
Molecular Weight (calculated)
53318.9 Da
IEP (calculated)
10.493
GRAVY (calculated)
-0.504
Length
511 amino acids
Sequence
(BLAST)
(BLAST)
001: MCPAGRAACR VRAPETAPPP LSHLESKRAE RGPPGTSKLF LLRGRVSFLL SVRGSGDGER TGTAHRRLYI NGVHLPPRLR SSRSSLTSAG ASSDPSNDTV
101: RELPLSSDQF LASPAMEAYS RDLLRGVGGG GEAGRGEEKP GRLDSQTEEV ELSLGLSLGG RFGQERRRGE GLARSSSVAC IQQVALAPPA LPRTHSLPPM
201: AEAEAGNTTA SPRSGAEVQP QGSGAPLNGA VVEPAALPRA SLSPPSTGSS DGEGKLRASL SPPSTGSSAG DGILTRTSSL PAGIEDGWRK RKLAETLNKL
301: EMKRRIERMN SSNVSVGEVG ENADEMSEQA GGKQKAQRMN HSNVRRRLSG LPPPYQPPAA SQGPKRNSAL KGTPGALERS LSSAVLPSSE GANSGAVTTP
401: SSSALAVRAA APGISTGEQR DGSERPAARA TRTRSVADMV RKMPVVYTSG LPNGERIDGF LYQYSRAEEV RIVCVCHGSF LTPAEFVAHA GGGEVAHPMR
501: HIVVNPPSSS L
101: RELPLSSDQF LASPAMEAYS RDLLRGVGGG GEAGRGEEKP GRLDSQTEEV ELSLGLSLGG RFGQERRRGE GLARSSSVAC IQQVALAPPA LPRTHSLPPM
201: AEAEAGNTTA SPRSGAEVQP QGSGAPLNGA VVEPAALPRA SLSPPSTGSS DGEGKLRASL SPPSTGSSAG DGILTRTSSL PAGIEDGWRK RKLAETLNKL
301: EMKRRIERMN SSNVSVGEVG ENADEMSEQA GGKQKAQRMN HSNVRRRLSG LPPPYQPPAA SQGPKRNSAL KGTPGALERS LSSAVLPSSE GANSGAVTTP
401: SSSALAVRAA APGISTGEQR DGSERPAARA TRTRSVADMV RKMPVVYTSG LPNGERIDGF LYQYSRAEEV RIVCVCHGSF LTPAEFVAHA GGGEVAHPMR
501: HIVVNPPSSS L
001: MGEASRQQRA WNREMTVTTN LSLDIDKYPR DLLRGFMSEN GGGRVFHGGE TNCDDESTIE LNLGLSLGGR FGVDKTPRKL KRSSSVLDTV PFNDSTVAEP
101: ENYTVGLERT TSLPAEMEEE WRKRKEMQSL RRMEAKRRRC EKQSFRVGNS DDQTVSFENE RWVTASKSGF LQRHLVSSNR QVCGVDSDGG GATGGGSSSS
201: LSELDNKNQQ GSSNSCNDER SPKIVAGCSS NSGSQGTERP SVTRANKVNE NENEKRVRSE DSVDRKGKGM ATSTGLVDMP CVFTKGDGPN GRRVDGILYK
301: YGKGEEVRIM CICHGSFLTP AEFVKHGGGG DVDRPLRHIV VNTSSSTF
101: ENYTVGLERT TSLPAEMEEE WRKRKEMQSL RRMEAKRRRC EKQSFRVGNS DDQTVSFENE RWVTASKSGF LQRHLVSSNR QVCGVDSDGG GATGGGSSSS
201: LSELDNKNQQ GSSNSCNDER SPKIVAGCSS NSGSQGTERP SVTRANKVNE NENEKRVRSE DSVDRKGKGM ATSTGLVDMP CVFTKGDGPN GRRVDGILYK
301: YGKGEEVRIM CICHGSFLTP AEFVKHGGGG DVDRPLRHIV VNTSSSTF
Arabidopsis Description
AFP2AFP2 [Source:UniProtKB/TrEMBL;Acc:A0A178WBB1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.