Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3B01G404300.1 | Wheat | nucleus | 91.03 | 90.79 |
| TraesCS3B01G404400.1 | Wheat | nucleus | 90.0 | 89.77 |
| TraesCS3B01G404500.1 | Wheat | nucleus | 89.74 | 89.51 |
| TraesCS3D01G365000.1 | Wheat | nucleus | 85.38 | 84.09 |
| TraesCS3D01G365500.1 | Wheat | nucleus | 82.31 | 83.81 |
| HORVU3Hr1G084360.2 | Barley | nucleus | 82.31 | 75.89 |
| Os01t0859300-01 | Rice | nucleus | 56.41 | 68.11 |
| KXG33733 | Sorghum | nucleus | 63.33 | 60.1 |
| Zm00001d012296_P001 | Maize | nucleus | 62.56 | 59.22 |
| Zm00001d042779_P001 | Maize | nucleus | 54.62 | 55.61 |
| GSMUA_Achr8P07740_001 | Banana | nucleus | 33.59 | 37.75 |
| KRG96191 | Soybean | nucleus | 36.92 | 37.21 |
| CDX75056 | Canola | nucleus | 37.95 | 37.09 |
| CDX84141 | Canola | nucleus | 37.44 | 37.06 |
| GSMUA_Achr3P22710_001 | Banana | nucleus | 32.82 | 36.47 |
| VIT_06s0080g00340.t01 | Wine grape | nucleus | 30.26 | 36.42 |
| KRH22688 | Soybean | nucleus | 30.77 | 35.71 |
| TraesCS4D01G177700.1 | Wheat | nucleus | 20.26 | 35.43 |
| Bra017251.1-P | Field mustard | nucleus | 35.9 | 35.35 |
| AT3G44460.1 | Thale cress | nucleus | 30.0 | 35.35 |
| CDY43738 | Canola | nucleus | 36.15 | 34.9 |
| Bra019436.1-P | Field mustard | nucleus | 29.74 | 34.52 |
| Bra005287.1-P | Field mustard | nucleus | 38.72 | 34.47 |
| CDY10500 | Canola | nucleus | 30.51 | 34.39 |
| VIT_08s0007g03420.t01 | Wine grape | nucleus | 35.13 | 34.25 |
| CDY08701 | Canola | nucleus | 30.0 | 33.81 |
| TraesCS7D01G171300.1 | Wheat | nucleus | 29.74 | 33.62 |
| AT2G36270.3 | Thale cress | nucleus | 38.21 | 33.56 |
| TraesCS2D01G098700.1 | Wheat | nucleus | 23.33 | 33.46 |
| PGSC0003DMT400006851 | Potato | nucleus | 36.67 | 33.41 |
| TraesCS6D01G312800.1 | Wheat | nucleus | 30.77 | 33.33 |
| TraesCS1D01G306000.1 | Wheat | nucleus | 27.95 | 33.33 |
| Solyc09g009490.2.1 | Tomato | nucleus | 36.41 | 33.33 |
| TraesCS3D01G330300.1 | Wheat | nucleus | 28.72 | 33.23 |
| TraesCS5D01G244500.1 | Wheat | nucleus | 30.26 | 32.24 |
| TraesCS1D01G273100.1 | Wheat | nucleus | 20.77 | 32.14 |
| KRH32737 | Soybean | nucleus | 35.9 | 31.32 |
| TraesCS3D01G371900.1 | Wheat | nucleus | 19.74 | 30.8 |
| KRH37750 | Soybean | nucleus | 16.15 | 29.86 |
| KRH20056 | Soybean | nucleus | 36.67 | 28.95 |
| TraesCS5D01G150700.1 | Wheat | nucleus | 22.05 | 27.22 |
| KRH26633 | Soybean | mitochondrion | 29.74 | 18.01 |
Protein Annotations
| Gene3D:1.20.5.170 | MapMan:15.5.4.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003700 | GO:GO:0006139 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR004827 |
| PFAM:PF00170 | ScanProsite:PS00036 | PFscan:PS50217 | PANTHER:PTHR22952 | PANTHER:PTHR22952:SF187 | SMART:SM00338 |
| SUPFAM:SSF57959 | EnsemblPlantsGene:TraesCS3D01G364900 | EnsemblPlants:TraesCS3D01G364900.1 | InterPro:bZIP | TIGR:cd14707 | SEG:seg |
Description
No Description!
Coordinates
chr3D:+:478738607..478740140
Molecular Weight (calculated)
41802.1 Da
IEP (calculated)
6.088
GRAVY (calculated)
-0.488
Length
390 amino acids
Sequence
(BLAST)
(BLAST)
001: MASEMSKDVK FSEEEVSSHP RVLEGEELTV APARQSSIFA LTLDELQYSV CEAGRNFGSM NMDEFMSNIW NAEEFQAATG GGLVGMEVAP VVGAGAGGGG
101: ADAGGSNLAR QESFSLPPPL CRKTVEEVWA EINREPRQVH AQPQGARASQ QPPVQPPVAA NDRQGTLGEM TLEQFLVKAG VVRGSGAGGQ APVPVGMVHA
201: QMNPVQQGQQ PGPMMYPMAP ANGMFQVMGD GMGFVPNGYA GMAVVPPPPP PQGGMGIVSP GSSDGRSAMT QADMMNCMGD GAMMENGGAR KRGAPEDQSC
301: ERSIERRHRR MIKNRESAAR SRARKQAYTV ELEAELNHLK EENARLKAEE KTILLTKKQM LVEKMIEQSK ENVNVKKGGT LSRRCGSCIW
101: ADAGGSNLAR QESFSLPPPL CRKTVEEVWA EINREPRQVH AQPQGARASQ QPPVQPPVAA NDRQGTLGEM TLEQFLVKAG VVRGSGAGGQ APVPVGMVHA
201: QMNPVQQGQQ PGPMMYPMAP ANGMFQVMGD GMGFVPNGYA GMAVVPPPPP PQGGMGIVSP GSSDGRSAMT QADMMNCMGD GAMMENGGAR KRGAPEDQSC
301: ERSIERRHRR MIKNRESAAR SRARKQAYTV ELEAELNHLK EENARLKAEE KTILLTKKQM LVEKMIEQSK ENVNVKKGGT LSRRCGSCIW
001: MVTRETKLTS EREVESSMAQ ARHNGGGGGE NHPFTSLGRQ SSIYSLTLDE FQHALCENGK NFGSMNMDEF LVSIWNAEEN NNNQQQAAAA AGSHSVPANH
101: NGFNNNNNNG GEGGVGVFSG GSRGNEDANN KRGIANESSL PRQGSLTLPA PLCRKTVDEV WSEIHRGGGS GNGGDSNGRS SSSNGQNNAQ NGGETAARQP
201: TFGEMTLEDF LVKAGVVREH PTNPKPNPNP NQNQNPSSVI PAAAQQQLYG VFQGTGDPSF PGQAMGVGDP SGYAKRTGGG GYQQAPPVQA GVCYGGGVGF
301: GAGGQQMGMV GPLSPVSSDG LGHGQVDNIG GQYGVDMGGL RGRKRVVDGP VEKVVERRQR RMIKNRESAA RSRARKQAYT VELEAELNQL KEENAQLKHA
401: LAELERKRKQ QYFESLKSRA QPKLPKSNGR LRTLMRNPSC PL
101: NGFNNNNNNG GEGGVGVFSG GSRGNEDANN KRGIANESSL PRQGSLTLPA PLCRKTVDEV WSEIHRGGGS GNGGDSNGRS SSSNGQNNAQ NGGETAARQP
201: TFGEMTLEDF LVKAGVVREH PTNPKPNPNP NQNQNPSSVI PAAAQQQLYG VFQGTGDPSF PGQAMGVGDP SGYAKRTGGG GYQQAPPVQA GVCYGGGVGF
301: GAGGQQMGMV GPLSPVSSDG LGHGQVDNIG GQYGVDMGGL RGRKRVVDGP VEKVVERRQR RMIKNRESAA RSRARKQAYT VELEAELNQL KEENAQLKHA
401: LAELERKRKQ QYFESLKSRA QPKLPKSNGR LRTLMRNPSC PL
Arabidopsis Description
ABI5Basic-leucine zipper (bZIP) transcription factor family protein [Source:TAIR;Acc:AT2G36270]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.