Factsheet for TraesCS6D01G312800.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6B01G364000.1	Wheat	nucleus	95.83	98.29
TraesCS6A01G333600.2	Wheat	nucleus	94.44	97.14
HORVU6Hr1G080670.1	Barley	nucleus	93.89	94.68
Os02t0766700-01	Rice	nucleus	73.61	74.23
EES07580	Sorghum	nucleus	69.17	71.97
Zm00001d018178_P001	Maize	nucleus	68.33	70.09
TraesCS7D01G171300.1	Wheat	nucleus	57.5	60.0
KRH52002	Soybean	cytosol	15.56	57.14
CDY65560	Canola	nucleus	46.11	54.97
CDY28083	Canola	nucleus	33.61	51.05
CDY17109	Canola	nucleus	47.22	50.75
Bra040260.1-P	Field mustard	nucleus	48.89	48.35
CDY18575	Canola	nucleus	46.67	47.73
CDY68227	Canola	nucleus	45.83	47.28
CDY51041	Canola	nucleus	43.33	47.27
GSMUA_Achr6P30550_001	Banana	nucleus	52.22	47.24
CDX69020	Canola	nucleus	45.56	46.86
CDX99242	Canola	nucleus	45.83	46.61
Bra022409.1-P	Field mustard	nucleus	45.0	45.76
CDY63041	Canola	nucleus	45.0	45.76
CDX92320	Canola	nucleus	45.0	45.63
TraesCS5D01G244500.1	Wheat	nucleus	46.39	45.63
CDX82302	Canola	nucleus	45.28	44.78
Bra037533.1-P	Field mustard	nucleus	48.06	44.59
Bra001742.1-P	Field mustard	nucleus	43.89	44.51
VIT_03s0063g00310.t01	Wine grape	nucleus	49.72	43.77
KRH61298	Soybean	nucleus	50.28	43.41
Bra018800.1-P	Field mustard	nucleus	44.17	43.21
GSMUA_Achr5P05690_001	Banana	nucleus	48.33	42.75
CDY58256	Canola	nucleus	46.39	42.71
GSMUA_Achr5P24570_001	Banana	nucleus	45.83	42.53
VIT_18s0001g10450.t01	Wine grape	nucleus	52.78	42.51
PGSC0003DMT400059040	Potato	nucleus	43.06	42.35
GSMUA_Achr6P04270_001	Banana	nucleus	44.72	42.04
GSMUA_Achr9P27130_001	Banana	nucleus	46.94	41.94
AT1G45249.6	Thale cress	nucleus	49.72	41.53
Solyc04g078840.2.1	Tomato	nucleus	51.39	41.39
Solyc01g108080.2.1	Tomato	nucleus	47.22	41.06
KRH50289	Soybean	nucleus	48.06	40.8
CDX72445	Canola	nucleus	46.39	40.73
PGSC0003DMT400020670	Potato	nucleus	51.11	40.62
AT3G19290.3	Thale cress	nucleus	48.33	40.28
PGSC0003DMT400066603	Potato	nucleus	46.11	40.1
Solyc10g050210.1.1	Tomato	nucleus	43.06	39.95
KRH71134	Soybean	nucleus	47.78	39.18
PGSC0003DMT400015892	Potato	nucleus	44.44	38.65
Solyc11g044560.1.1	Tomato	nucleus	42.78	38.6
GSMUA_Achr3P07000_001	Banana	nucleus	43.06	38.46
AT1G49720.2	Thale cress	nucleus	41.94	37.47
AT4G34000.2	Thale cress	nucleus	46.39	36.78
Bra011485.1-P	Field mustard	nucleus	44.44	36.45
KRH52003	Soybean	nucleus	32.22	35.26
TraesCS4D01G177700.1	Wheat	nucleus	20.56	33.18
TraesCS2D01G098700.1	Wheat	nucleus	24.72	32.72
Bra017621.1-P	Field mustard	cytosol	26.39	31.88
AT5G42910.1	Thale cress	nucleus	31.94	31.08
TraesCS3D01G364900.1	Wheat	nucleus	33.33	30.77
TraesCS3D01G330300.1	Wheat	nucleus	28.33	30.27
TraesCS1D01G306000.1	Wheat	nucleus	27.22	29.97
TraesCS3D01G371900.1	Wheat	nucleus	20.56	29.6
CDY22378	Canola	nucleus	30.83	28.1
CDX71528	Canola	nucleus	30.28	27.88
TraesCS1D01G273100.1	Wheat	nucleus	19.44	27.78
TraesCS3D01G365000.1	Wheat	nucleus	30.28	27.53
TraesCS3D01G365500.1	Wheat	nucleus	28.89	27.15
Bra033649.1-P	Field mustard	nucleus	30.83	26.81
TraesCS5D01G150700.1	Wheat	nucleus	21.94	25.0

Protein Annotations

Gene3D:1.20.5.170	MapMan:15.5.4.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003700	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0006950
GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009414
GO:GO:0009628	GO:GO:0009651	GO:GO:0009719	GO:GO:0009738	GO:GO:0009987	InterPro:IPR004827
PFAM:PF00170	ScanProsite:PS00036	PFscan:PS50217	PANTHER:PTHR22952	PANTHER:PTHR22952:SF103	SMART:SM00338
SUPFAM:SSF57959	EnsemblPlantsGene:TraesCS6D01G312800	EnsemblPlants:TraesCS6D01G312800.1	InterPro:bZIP	TIGR:cd14707	SEG:seg

Description

No Description!

Coordinates

chr6D:+:421880151..421884025

Molecular Weight (calculated)

38672.4 Da

IEP (calculated)

10.262

GRAVY (calculated)

-0.588

Length

360 amino acids

Sequence
(BLAST)

001: MDFPGGSGRP PPPPQQHQHQ LLPPMTPLPL TRQGSSVYSL TFDEFQSAIG GPGKDFGSMN MDELLRNIWT AEESQAIGAG PNAAASSSAA AGPDHGGIQR
101: QGSLTLPRTL SQKTVDEVWR DMMFFGGPSA SASAAAEAPP PAQRQQTLGE VTLEEFLVRA GVVREDMPGP PPPVSPAPVA QAPPPQPQML FPQSNMFAPM
201: VNPLSLANGL MTGAYGQGGG GGGGAPAMVS PSPTGRPVMS NGYGKMEGLN LSSLSPPPMP YVFSGGLRGR KPPAMEKVVE RRQRRMIKNR ESAARSRQRK
301: QSYMMELETE VAKLKERNEE LQRKQAEILE RQKNEVFEKV SRQAGPTSKR ICLRRTLTGP

Best Arabidopsis Sequence Match ( AT3G19290.4 )
(BLAST)

001: MGTHINFNNL GGGGHPGGEG SSNQMKPTGS VMPLARQSSV YSLTFDELQN TLGGPGKDFG SMNMDELLKS IWTAEEAQAM AMTSAPAATA VAQPGAGIPP
101: PGGNLQRQGS LTLPRTISQK TVDEVWKCLI TKDGNMEGSS GGGGESNVPP GRQQTLGEMT LEEFLFRAGV VREDNCVQQM GQVNGNNNNG FYGNSTAAGG
201: LGFGFGQPNQ NSITFNGTND SMILNQPPGL GLKMGGTMQQ QQQQQQLLQQ QQQQMQQLNQ PHPQQRLPQT IFPKQANVAF SAPVNITNKG FAGAANNSIN
301: NNNGLASYGG TGVTVAATSP GTSSAENNSL SPVPYVLNRG RRSNTGLEKV IERRQRRMIK NRESAARSRA RKQAYTLELE AEIEKLKKTN QELQKKQAEM
401: VEMQKNEVIV

Arabidopsis Description

ABF4ABRE binding factor 4 [Source:UniProtKB/TrEMBL;Acc:F4JB53]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.