Factsheet for PGSC0003DMT400015892

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
endoplasmic reticulum 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g050210.1.1	Tomato	nucleus	83.09	88.66
PGSC0003DMT400059040	Potato	nucleus	59.9	67.76
PGSC0003DMT400066603	Potato	nucleus	62.8	62.8
VIT_03s0063g00310.t01	Wine grape	nucleus	51.21	51.83
CDY28083	Canola	nucleus	28.5	49.79
CDX99242	Canola	nucleus	42.51	49.72
CDY51041	Canola	nucleus	38.41	48.18
Bra022409.1-P	Field mustard	nucleus	41.06	48.02
CDY63041	Canola	nucleus	41.06	48.02
CDX92320	Canola	nucleus	41.06	47.89
KRH50289	Soybean	nucleus	49.03	47.88
Bra001742.1-P	Field mustard	nucleus	40.82	47.61
CDY68227	Canola	nucleus	40.1	47.56
Os06t0211200-01	Rice	nucleus	37.2	47.53
CDY18575	Canola	nucleus	40.34	47.44
GSMUA_Achr6P30550_001	Banana	nucleus	45.17	46.98
CDX82302	Canola	nucleus	41.06	46.7
TraesCS6B01G364000.1	Wheat	nucleus	39.13	46.15
PGSC0003DMT400020670	Potato	nucleus	50.48	46.14
CDX69020	Canola	nucleus	38.89	46.0
TraesCS6A01G333600.2	Wheat	nucleus	38.89	46.0
Os02t0766700-01	Rice	nucleus	39.37	45.66
Os08t0472000-01	Rice	nucleus	35.02	45.6
EES07580	Sorghum	nucleus	37.92	45.38
GSMUA_Achr5P24570_001	Banana	nucleus	42.51	45.36
Bra037533.1-P	Field mustard	nucleus	42.51	45.36
HORVU7Hr1G035500.2	Barley	nucleus	36.47	45.35
KRH71134	Soybean	nucleus	48.07	45.33
OQU78764	Sorghum	nucleus	34.06	45.19
Bra018800.1-P	Field mustard	nucleus	40.1	45.11
HORVU6Hr1G080670.1	Barley	nucleus	38.89	45.1
GSMUA_Achr5P05690_001	Banana	nucleus	44.2	44.96
OQU80633	Sorghum	nucleus	41.3	44.76
TraesCS7B01G075600.1	Wheat	nucleus	36.72	44.71
GSMUA_Achr9P27130_001	Banana	nucleus	43.48	44.66
CDY58256	Canola	nucleus	42.03	44.5
TraesCS6D01G312800.1	Wheat	nucleus	38.65	44.44
Zm00001d037170_P001	Maize	nucleus	36.23	44.38
KXG19586	Sorghum	nucleus	37.2	44.25
Zm00001d044940_P002	Maize	nucleus	37.44	44.16
TraesCS7A01G170600.1	Wheat	nucleus	36.47	44.02
TraesCS7D01G171300.1	Wheat	nucleus	36.47	43.77
AT3G19290.3	Thale cress	nucleus	45.65	43.75
EER96850	Sorghum	nucleus	38.41	43.44
GSMUA_Achr6P04270_001	Banana	nucleus	40.1	43.34
Zm00001d018178_P001	Maize	nucleus	36.72	43.3
Os09t0456200-01	Rice	nucleus	39.13	43.09
CDX72445	Canola	nucleus	42.51	42.93
TraesCS5A01G237200.2	Wheat	nucleus	37.68	42.39
TraesCS5D01G244500.1	Wheat	nucleus	37.44	42.35
GSMUA_Achr3P07000_001	Banana	nucleus	40.82	41.94
HORVU5Hr1G068230.1	Barley	nucleus	36.96	41.69
TraesCS5B01G235600.2	Wheat	nucleus	36.72	41.53
AT4G34000.2	Thale cress	nucleus	43.96	40.09
AT1G49720.2	Thale cress	nucleus	38.41	39.45
PGSC0003DMT400058469	Potato	nucleus	13.77	39.04
Zm00001d031790_P002	Maize	nucleus	33.09	38.38
Zm00001d050018_P007	Maize	nucleus	35.99	38.11
Bra011485.1-P	Field mustard	nucleus	40.34	38.04
KXG26981	Sorghum	nucleus	14.98	37.58
Zm00001d020711_P001	Maize	nucleus	35.51	36.3
PGSC0003DMT400072260	Potato	nucleus	28.5	34.01
PGSC0003DMT400018574	Potato	nucleus	25.12	32.6
Bra017621.1-P	Field mustard	cytosol	23.19	32.21
PGSC0003DMT400006851	Potato	nucleus	31.64	30.61
Zm00001d005884_P002	Maize	nucleus	21.98	29.84
PGSC0003DMT400076576	Potato	nucleus	18.12	26.41

Protein Annotations

Gene3D:1.20.5.170	EntrezGene:102597983	MapMan:15.5.4.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003700
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:IPR004827	UniProt:M1A6S2	PFAM:PF00170	EnsemblPlantsGene:PGSC0003DMG400006211	PGSC:PGSC0003DMG400006211	EnsemblPlants:PGSC0003DMT400015892
ScanProsite:PS00036	PFscan:PS50217	PANTHER:PTHR22952	PANTHER:PTHR22952:SF158	SMART:SM00338	SUPFAM:SSF57959
UniParc:UPI0002953F4A	RefSeq:XP_006356586.1	InterPro:bZIP	SEG:seg	:	:

Description

BZIP [Source:PGSC_GENE;Acc:PGSC0003DMG400006211]

Coordinates

chr10:-:42448631..42451072

Molecular Weight (calculated)

45328.5 Da

IEP (calculated)

9.651

GRAVY (calculated)

-0.636

Length

414 amino acids

Sequence
(BLAST)

001: MGSYLNFKNF TDTPQIESNG EKSLGSGSFP LARQSSMYSL TFEELQSTCG LGKDVGSMNL EDLLRNIWTA EDSQALASSA GVGEGRMAAG NLQRQGSLTL
101: PQTLNQRTVD EVWRDFQNET TVSSNLGQKQ SNLGEMTLEE FLVRAGVVRD DNQPNGTSNN AGFAGVLGEP SSNNNALNIA FQQPTQWPGL LSNQFAESNM
201: LNVVSVKSSQ QQPHQQQPLI PKQRNVDFAS PMQLGNNCQL ASPRVRALVV STSSRSVNTT VVQGGVMQNG VTGMAGLRSG VTFAPAKGGS PGNQLSSEMI
301: SNDKLNRPSP SPSPYAFNEG RRGRKSCSSL EKVVERRHKR MIKNRESAAR SRARKQAYTL ELEAEVAKLK EINEELQEKQ AEFIDPQKNQ LLEKMNMPLG
401: SKLRCLRRTL TGPW

Best Arabidopsis Sequence Match ( AT4G34000.2 )
(BLAST)

001: MGSRLNFKSF VDGVSEQQPT VGTSLPLTRQ NSVFSLTFDE FQNSWGGGIG KDFGSMNMDE LLKNIWTAEE SHSMMGNNTS YTNISNGNSG NTVINGGGNN
101: IGGLAVGVGG ESGGFFTGGS LQRQGSLTLP RTISQKRVDD VWKELMKEDD IGNGVVNGGT SGIPQRQQTL GEMTLEEFLV RAGVVREEPQ PVESVTNFNG
201: GFYGFGSNGG LGTASNGFVA NQPQDLSGNG VAVRQDLLTA QTQPLQMQQP QMVQQPQMVQ QPQQLIQTQE RPFPKQTTIA FSNTVDVVNR SQPATQCQEV
301: KPSILGIHNH PMNNNLLQAV DFKTGVTVAA VSPGSQMSPD LTPKSALDAS LSPVPYMFGR VRKTGAVLEK VIERRQKRMI KNRESAARSR ARKQAYTMEL
401: EAEIAQLKEL NEELQKKQVE IMEKQKNQLL EPLRQPWGMG CKRQCLRRTL TGPW

Arabidopsis Description

ABF3ABSCISIC ACID-INSENSITIVE 5-like protein 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9M7Q3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.