Factsheet for GSMUA_Achr6P30550_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
endoplasmic reticulum 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr5P24570_001	Banana	nucleus	69.85	71.65
GSMUA_Achr6P04270_001	Banana	nucleus	63.32	65.8
GSMUA_Achr9P27130_001	Banana	nucleus	63.57	62.78
CDY65560	Canola	nucleus	45.73	60.26
KRH52002	Soybean	cytosol	14.32	58.16
GSMUA_Achr5P05690_001	Banana	nucleus	59.3	57.99
EES07580	Sorghum	nucleus	48.74	56.07
Os06t0211200-01	Rice	nucleus	45.48	55.86
Os02t0766700-01	Rice	nucleus	49.75	55.46
Zm00001d037170_P001	Maize	nucleus	46.98	55.33
HORVU7Hr1G035500.2	Barley	nucleus	45.73	54.65
CDY17109	Canola	nucleus	45.98	54.63
Zm00001d018178_P001	Maize	nucleus	47.99	54.42
EER96850	Sorghum	nucleus	50.0	54.37
Os08t0472000-01	Rice	nucleus	43.22	54.09
TraesCS6A01G333600.2	Wheat	nucleus	47.49	54.0
Bra040260.1-P	Field mustard	nucleus	49.25	53.85
KXG19586	Sorghum	nucleus	46.98	53.74
TraesCS6B01G364000.1	Wheat	nucleus	47.24	53.56
Zm00001d044940_P002	Maize	nucleus	46.98	53.28
TraesCS7B01G075600.1	Wheat	nucleus	45.48	53.24
HORVU6Hr1G080670.1	Barley	nucleus	47.74	53.22
GSMUA_Achr3P07000_001	Banana	nucleus	53.52	52.85
VIT_03s0063g00310.t01	Wine grape	nucleus	54.02	52.57
KRH61298	Soybean	nucleus	55.03	52.52
TraesCS7A01G170600.1	Wheat	nucleus	45.23	52.48
TraesCS7D01G171300.1	Wheat	nucleus	45.48	52.46
TraesCS6D01G312800.1	Wheat	nucleus	47.24	52.22
CDY28083	Canola	nucleus	30.9	51.9
OQU78764	Sorghum	nucleus	40.45	51.6
VIT_18s0001g10450.t01	Wine grape	nucleus	57.79	51.45
CDX99242	Canola	nucleus	45.23	50.85
TraesCS5A01G237200.2	Wheat	nucleus	46.98	50.82
Os09t0456200-01	Rice	nucleus	47.99	50.8
OQU80633	Sorghum	nucleus	48.74	50.79
CDY18575	Canola	nucleus	44.72	50.57
Bra022409.1-P	Field mustard	nucleus	44.97	50.56
CDX92320	Canola	nucleus	44.97	50.42
TraesCS5D01G244500.1	Wheat	nucleus	46.23	50.27
TraesCS5B01G235600.2	Wheat	nucleus	45.98	50.0
HORVU5Hr1G068230.1	Barley	nucleus	45.98	49.86
CDY51041	Canola	nucleus	41.21	49.7
CDX82302	Canola	nucleus	44.97	49.18
CDY68227	Canola	nucleus	42.96	49.0
Solyc04g078840.2.1	Tomato	nucleus	55.03	48.99
CDX69020	Canola	nucleus	42.96	48.86
Bra001742.1-P	Field mustard	nucleus	43.47	48.73
AT1G45249.6	Thale cress	nucleus	52.76	48.72
CDY63041	Canola	nucleus	42.71	48.02
KRH50289	Soybean	nucleus	51.01	47.88
PGSC0003DMT400020670	Potato	nucleus	54.27	47.68
Bra037533.1-P	Field mustard	nucleus	46.48	47.68
KRH52003	Soybean	nucleus	39.2	47.42
CDY58256	Canola	nucleus	45.98	46.8
Solyc01g108080.2.1	Tomato	nucleus	48.49	46.62
Bra018800.1-P	Field mustard	nucleus	42.96	46.47
PGSC0003DMT400059040	Potato	nucleus	42.21	45.9
Zm00001d020711_P001	Maize	nucleus	46.48	45.68
Solyc10g050210.1.1	Tomato	nucleus	44.47	45.62
KRH71134	Soybean	nucleus	50.25	45.56
PGSC0003DMT400066603	Potato	nucleus	47.24	45.41
PGSC0003DMT400015892	Potato	nucleus	46.98	45.17
Zm00001d031790_P002	Maize	nucleus	39.7	44.26
AT3G19290.3	Thale cress	nucleus	47.74	43.98
CDX72445	Canola	nucleus	44.72	43.41
KXG26981	Sorghum	nucleus	17.84	43.03
Zm00001d050018_P007	Maize	nucleus	41.21	41.94
Solyc11g044560.1.1	Tomato	nucleus	41.96	41.85
AT1G49720.2	Thale cress	nucleus	41.71	41.19
GSMUA_Achr8P21560_001	Banana	nucleus	24.37	40.76
AT4G34000.2	Thale cress	nucleus	45.73	40.09
GSMUA_AchrUn_...	Banana	nucleus	27.14	39.42
Zm00001d005884_P002	Maize	nucleus	30.15	39.34
Bra011485.1-P	Field mustard	nucleus	42.96	38.95
GSMUA_Achr8P07740_001	Banana	nucleus	33.67	38.62
GSMUA_Achr10P...	Banana	mitochondrion, nucleus	19.6	38.61
GSMUA_Achr3P22710_001	Banana	nucleus	33.67	38.18
GSMUA_Achr11P...	Banana	nucleus	23.12	37.86
GSMUA_Achr6P15970_001	Banana	nucleus	18.34	37.63
GSMUA_Achr2P20490_001	Banana	nucleus	21.86	35.8
GSMUA_Achr10P...	Banana	nucleus	20.6	35.04
Bra017621.1-P	Field mustard	cytosol	25.13	33.56
GSMUA_Achr2P07520_001	Banana	nucleus	17.84	32.57
GSMUA_Achr3P22470_001	Banana	nucleus	20.6	32.03
CDY22378	Canola	nucleus	31.66	31.9
CDX71528	Canola	nucleus	30.9	31.46
AT5G42910.1	Thale cress	nucleus	29.15	31.35
GSMUA_Achr9P08900_001	Banana	nucleus	19.35	31.05
Bra033649.1-P	Field mustard	nucleus	31.41	30.19
GSMUA_Achr10P...	Banana	nucleus	18.84	28.09

Protein Annotations

Gene3D:1.20.5.170	MapMan:15.5.4.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003700	GO:GO:0006139
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSMUA_Achr6G30550_001
EnsemblPlants:GSMUA_Achr6P30550_001	EnsemblPlants:GSMUA_Achr6T30550_001	InterPro:IPR004827	UniProt:M0TBK0	PFAM:PF00170	ScanProsite:PS00036
PFscan:PS50217	PANTHER:PTHR22952	PANTHER:PTHR22952:SF368	SMART:SM00338	SUPFAM:SSF57959	UniParc:UPI0002965F35
InterPro:bZIP	SEG:seg	:	:	:	:

Description

bZIP transcription factor TRAB1 [Source:GMGC_GENE;Acc:GSMUA_Achr6G30550_001]

Coordinates

chr6:-:30516884..30522716

Molecular Weight (calculated)

41976.9 Da

IEP (calculated)

8.659

GRAVY (calculated)

-0.437

Length

398 amino acids

Sequence
(BLAST)

001: MDFKSLGGGG GGAGGEPPVP PPLARQGSVY SLTMDEFQST LGGIGKDFGS MNMDELLRNI WTAEESYAMT AALGDGSGPG SGLQRQGSLT LPRTLSQKTV
101: DEVWRDLVGH SSSCSQVPAV RGLDVPRQST LREMTLEEFL VRAGVVREDM APPQAPSRPT NNTSNDTSVF YGDLPAVNSS AGLDLGFSQA PAGSTGNIVD
201: APIPHGSAAN LGMTVTAARL YAPPMTLGNG VDLANPQGMT GGGLVGFGHA DVRNGLTTGI LGLGAAGVLA ASGSPADHLS SDRLGKGNGD LSSVSPVPYV
301: FSGGMRGRKG NGALEKVVER RQRRMIKNRE SAARSRARKQ AYTMELEAEV AKLKEQNQEL QEKQAEMMEM QKNQVLQMIN QQHGPKKKCL RRTQTGPW

Best Arabidopsis Sequence Match ( AT1G45249.1 )
(BLAST)

001: MDGSMNLGNE PPGDGGGGGG LTRQGSIYSL TFDEFQSSVG KDFGSMNMDE LLKNIWSAEE TQAMASGVVP VLGGGQEGLQ LQRQGSLTLP RTLSQKTVDQ
101: VWKDLSKVGS SGVGGSNLSQ VAQAQSQSQS QRQQTLGEVT LEEFLVRAGV VREEAQVAAR AQIAENNKGG YFGNDANTGF SVEFQQPSPR VVAAGVMGNL
201: GAETANSLQV QGSSLPLNVN GARTTYQQSQ QQQPIMPKQP GFGYGTQMGQ LNSPGIRGGG LVGLGDQSLT NNVGFVQGAS AAIPGALGVG AVSPVTPLSS
301: EGIGKSNGDS SSLSPSPYMF NGGVRGRKSG TVEKVVERRQ RRMIKNRESA ARSRARKQAY TVELEAEVAK LKEENDELQR KQARIMEMQK NQETEMRNLL
401: QGGPKKKLRR TESGPW

Arabidopsis Description

ABF2abscisic acid responsive elements-binding factor 2 [Source:TAIR;Acc:AT1G45249]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.