Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX92320 | Canola | nucleus | 93.79 | 93.52 |
| CDY18575 | Canola | nucleus | 82.2 | 82.67 |
| CDY58256 | Canola | nucleus | 80.79 | 73.15 |
| CDX82302 | Canola | nucleus | 75.14 | 73.08 |
| CDY63041 | Canola | nucleus | 72.88 | 72.88 |
| AT3G19290.3 | Thale cress | nucleus | 84.75 | 69.44 |
| CDY28083 | Canola | nucleus | 42.37 | 63.29 |
| CDY51041 | Canola | nucleus | 58.76 | 63.03 |
| CDY65560 | Canola | nucleus | 46.61 | 54.64 |
| CDY68227 | Canola | nucleus | 51.69 | 52.44 |
| CDX69020 | Canola | nucleus | 51.69 | 52.29 |
| CDY17109 | Canola | nucleus | 46.61 | 49.25 |
| VIT_03s0063g00310.t01 | Wine grape | nucleus | 56.21 | 48.66 |
| PGSC0003DMT400059040 | Potato | nucleus | 50.28 | 48.63 |
| Os08t0472000-01 | Rice | nucleus | 43.5 | 48.43 |
| EES07580 | Sorghum | nucleus | 46.89 | 47.98 |
| Os06t0211200-01 | Rice | nucleus | 43.5 | 47.53 |
| TraesCS6A01G333600.2 | Wheat | nucleus | 46.89 | 47.43 |
| TraesCS6B01G364000.1 | Wheat | nucleus | 46.89 | 47.29 |
| HORVU7Hr1G035500.2 | Barley | nucleus | 44.35 | 47.15 |
| Os02t0766700-01 | Rice | nucleus | 47.46 | 47.06 |
| EER96850 | Sorghum | nucleus | 48.59 | 46.99 |
| Os09t0456200-01 | Rice | nucleus | 49.72 | 46.81 |
| HORVU6Hr1G080670.1 | Barley | nucleus | 47.18 | 46.78 |
| TraesCS7B01G075600.1 | Wheat | nucleus | 44.92 | 46.76 |
| TraesCS5A01G237200.2 | Wheat | nucleus | 48.31 | 46.47 |
| Zm00001d037170_P001 | Maize | nucleus | 44.35 | 46.45 |
| Zm00001d018178_P001 | Maize | nucleus | 46.05 | 46.44 |
| TraesCS7A01G170600.1 | Wheat | nucleus | 44.63 | 46.06 |
| TraesCS6D01G312800.1 | Wheat | nucleus | 46.61 | 45.83 |
| TraesCS7D01G171300.1 | Wheat | nucleus | 44.63 | 45.8 |
| KRH50289 | Soybean | nucleus | 54.8 | 45.75 |
| Solyc01g108080.2.1 | Tomato | nucleus | 53.39 | 45.65 |
| PGSC0003DMT400066603 | Potato | nucleus | 53.39 | 45.65 |
| TraesCS5D01G244500.1 | Wheat | nucleus | 47.18 | 45.63 |
| CDX72445 | Canola | nucleus | 52.82 | 45.61 |
| TraesCS5B01G235600.2 | Wheat | nucleus | 46.89 | 45.36 |
| GSMUA_Achr6P30550_001 | Banana | nucleus | 50.85 | 45.23 |
| KXG19586 | Sorghum | nucleus | 44.35 | 45.11 |
| OQU80633 | Sorghum | nucleus | 48.31 | 44.76 |
| HORVU5Hr1G068230.1 | Barley | nucleus | 46.33 | 44.69 |
| Solyc11g044560.1.1 | Tomato | nucleus | 50.0 | 44.36 |
| OQU78764 | Sorghum | nucleus | 38.98 | 44.23 |
| Zm00001d044940_P002 | Maize | nucleus | 43.79 | 44.16 |
| GSMUA_Achr6P04270_001 | Banana | nucleus | 47.74 | 44.13 |
| KRH71134 | Soybean | nucleus | 54.52 | 43.96 |
| GSMUA_Achr9P27130_001 | Banana | nucleus | 49.44 | 43.42 |
| GSMUA_Achr5P24570_001 | Banana | nucleus | 46.61 | 42.53 |
| PGSC0003DMT400015892 | Potato | nucleus | 49.72 | 42.51 |
| GSMUA_Achr5P05690_001 | Banana | nucleus | 48.87 | 42.51 |
| Solyc10g050210.1.1 | Tomato | nucleus | 44.63 | 40.72 |
| GSMUA_Achr3P07000_001 | Banana | nucleus | 46.33 | 40.69 |
| CDY27189 | Canola | nucleus | 28.25 | 40.49 |
| CDX72108 | Canola | nucleus | 28.25 | 39.84 |
| CDY51261 | Canola | nucleus | 27.97 | 39.6 |
| Zm00001d050018_P007 | Maize | nucleus | 42.09 | 38.11 |
| Zm00001d020711_P001 | Maize | nucleus | 43.5 | 38.02 |
| Zm00001d031790_P002 | Maize | nucleus | 37.85 | 37.53 |
| CDX67659 | Canola | nucleus | 27.12 | 37.07 |
| CDX76014 | Canola | nucleus | 28.25 | 36.9 |
| CDY57581 | Canola | nucleus | 27.97 | 36.4 |
| KXG26981 | Sorghum | nucleus | 16.95 | 36.36 |
| CDY53679 | Canola | nucleus | 27.97 | 36.13 |
| CDY47381 | Canola | nucleus | 29.1 | 35.52 |
| CDY06946 | Canola | nucleus | 27.68 | 35.51 |
| CDX79959 | Canola | nucleus | 27.68 | 34.75 |
| Zm00001d005884_P002 | Maize | nucleus | 29.1 | 33.77 |
| CDX84141 | Canola | nucleus | 34.75 | 31.22 |
| CDX75056 | Canola | nucleus | 35.03 | 31.08 |
| CDX71528 | Canola | nucleus | 34.18 | 30.95 |
| CDY43738 | Canola | nucleus | 35.31 | 30.94 |
| CDY22378 | Canola | nucleus | 34.46 | 30.89 |
| CDY10500 | Canola | nucleus | 28.53 | 29.19 |
| CDY08701 | Canola | nucleus | 28.25 | 28.9 |
| CDY22311 | Canola | nucleus, plastid | 17.8 | 23.68 |
| CDY54481 | Canola | nucleus | 18.93 | 23.43 |
| CDX89852 | Canola | nucleus, plastid | 17.51 | 23.13 |
| CDY18197 | Canola | nucleus, plastid | 17.23 | 22.68 |
Protein Annotations
| Gene3D:1.20.5.170 | MapMan:15.5.4.1 | GO:A0A078EDW5 | EnsemblPlants:CDX99242 | ProteinID:CDX99242 | ProteinID:CDX99242.1 |
| ncoils:Coil | GO:GO:0003674 | GO:GO:0003700 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00107454001 | InterPro:IPR004827 | PFAM:PF00170 |
| ScanProsite:PS00036 | PFscan:PS50217 | PANTHER:PTHR22952 | PANTHER:PTHR22952:SF158 | SMART:SM00338 | SUPFAM:SSF57959 |
| UniParc:UPI0004EE1F3A | InterPro:bZIP | SEG:seg | : | : | : |
Description
BnaC05g33570D
Coordinates
chrLK031909:-:431646..434460
Molecular Weight (calculated)
38470.4 Da
IEP (calculated)
9.568
GRAVY (calculated)
-0.718
Length
354 amino acids
Sequence
(BLAST)
(BLAST)
001: MGTHINFNNL GGGDPGGEGF NQMKPTDTAY PLARQSSLYS RTFDELQSLL GGPGKDYGSM NMDELLKSIW TAEEAQAMSM TMTSSAPTTM VEPGGNLQRQ
101: GSLTLPRTIS QKTVDEVWKC LITKDGGGCS GGGCGESNNA PQRQQTLGEM TLEEFLSRAG VVREDNNSSQ HMGQVTGNNN NGFYGNNGAP GGLGFEFTIF
201: PKQANVAFAV NKSFNGAVNN SMNNTNGLAC FGGAGVAVAA TSPGTSSAEN NSLSPVPYVL NRGRRSNTGL EKVIERRQRR MIKNRESAAR SRARKQAYTL
301: ELEAEIEKLK KVNQELQRKQ AEMMEMQKNE LKESSKKPWG SKRQCLRRTL TGPW
101: GSLTLPRTIS QKTVDEVWKC LITKDGGGCS GGGCGESNNA PQRQQTLGEM TLEEFLSRAG VVREDNNSSQ HMGQVTGNNN NGFYGNNGAP GGLGFEFTIF
201: PKQANVAFAV NKSFNGAVNN SMNNTNGLAC FGGAGVAVAA TSPGTSSAEN NSLSPVPYVL NRGRRSNTGL EKVIERRQRR MIKNRESAAR SRARKQAYTL
301: ELEAEIEKLK KVNQELQRKQ AEMMEMQKNE LKESSKKPWG SKRQCLRRTL TGPW
001: MGTHINFNNL GGGGHPGGEG SSNQMKPTGS VMPLARQSSV YSLTFDELQN TLGGPGKDFG SMNMDELLKS IWTAEEAQAM AMTSAPAATA VAQPGAGIPP
101: PGGNLQRQGS LTLPRTISQK TVDEVWKCLI TKDGNMEGSS GGGGESNVPP GRQQTLGEMT LEEFLFRAGV VREDNCVQQM GQVNGNNNNG FYGNSTAAGG
201: LGFGFGQPNQ NSITFNGTND SMILNQPPGL GLKMGGTMQQ QQQQQQLLQQ QQQQMQQLNQ PHPQQRLPQT IFPKQANVAF SAPVNITNKG FAGAANNSIN
301: NNNGLASYGG TGVTVAATSP GTSSAENNSL SPVPYVLNRG RRSNTGLEKV IERRQRRMIK NRESAARSRA RKQAYTLELE AEIEKLKKTN QELQKKQAEM
401: VEMQKNELKE TSKRPWGSKR QCLRRTLTGP W
101: PGGNLQRQGS LTLPRTISQK TVDEVWKCLI TKDGNMEGSS GGGGESNVPP GRQQTLGEMT LEEFLFRAGV VREDNCVQQM GQVNGNNNNG FYGNSTAAGG
201: LGFGFGQPNQ NSITFNGTND SMILNQPPGL GLKMGGTMQQ QQQQQQLLQQ QQQQMQQLNQ PHPQQRLPQT IFPKQANVAF SAPVNITNKG FAGAANNSIN
301: NNNGLASYGG TGVTVAATSP GTSSAENNSL SPVPYVLNRG RRSNTGLEKV IERRQRRMIK NRESAARSRA RKQAYTLELE AEIEKLKKTN QELQKKQAEM
401: VEMQKNELKE TSKRPWGSKR QCLRRTLTGP W
Arabidopsis Description
ABF4ABRE binding factor 4 [Source:UniProtKB/TrEMBL;Acc:F4JB53]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.