CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
endoplasmic reticulum 1
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d018178_P001	Maize	nucleus	91.33	90.03
Os02t0766700-01	Rice	nucleus	78.9	76.47
HORVU6Hr1G080670.1	Barley	nucleus	73.12	70.87
TraesCS6A01G333600.2	Wheat	nucleus	71.68	70.86
TraesCS6B01G364000.1	Wheat	nucleus	71.68	70.66
TraesCS6D01G312800.1	Wheat	nucleus	71.97	69.17
KXG19586	Sorghum	nucleus	61.56	61.21
CDY65560	Canola	nucleus	47.4	54.3
KRH52002	Soybean	cytosol	15.03	53.06
CDY17109	Canola	nucleus	47.69	49.25
CDY18575	Canola	nucleus	49.71	48.86
GSMUA_Achr6P30550_001	Banana	nucleus	56.07	48.74
CDY68227	Canola	nucleus	47.69	47.28
CDY28083	Canola	nucleus	32.37	47.26
CDX99242	Canola	nucleus	47.98	46.89
CDX69020	Canola	nucleus	47.4	46.86
Bra040260.1-P	Field mustard	nucleus	49.13	46.7
EER96850	Sorghum	nucleus	49.13	46.45
CDY63041	Canola	nucleus	47.4	46.33
OQU80633	Sorghum	nucleus	50.58	45.81
Bra022409.1-P	Field mustard	nucleus	46.82	45.76
CDY51041	Canola	nucleus	43.64	45.76
CDX92320	Canola	nucleus	46.82	45.63
OQU78764	Sorghum	nucleus	41.04	45.51
GSMUA_Achr5P05690_001	Banana	nucleus	53.47	45.45
GSMUA_Achr9P27130_001	Banana	nucleus	52.02	44.66
Bra037533.1-P	Field mustard	nucleus	50.0	44.59
CDX82302	Canola	nucleus	46.53	44.23
Bra001742.1-P	Field mustard	nucleus	45.38	44.23
GSMUA_Achr5P24570_001	Banana	nucleus	49.42	44.07
KRH61298	Soybean	nucleus	52.6	43.65
GSMUA_Achr6P04270_001	Banana	nucleus	48.27	43.6
CDY58256	Canola	nucleus	48.55	42.97
PGSC0003DMT400059040	Potato	nucleus	45.38	42.9
VIT_03s0063g00310.t01	Wine grape	nucleus	50.58	42.79
VIT_18s0001g10450.t01	Wine grape	nucleus	55.2	42.73
Solyc04g078840.2.1	Tomato	nucleus	53.76	41.61
Bra018800.1-P	Field mustard	nucleus	44.22	41.58
GSMUA_Achr3P07000_001	Banana	nucleus	48.27	41.44
AT1G45249.6	Thale cress	nucleus	51.45	41.3
KXG26981	Sorghum	nucleus	19.65	41.21
PGSC0003DMT400020670	Potato	nucleus	53.76	41.06
AT3G19290.3	Thale cress	nucleus	51.16	40.97
Solyc01g108080.2.1	Tomato	nucleus	48.55	40.58
KRH50289	Soybean	nucleus	49.42	40.33
CDX72445	Canola	nucleus	47.4	40.0
PGSC0003DMT400066603	Potato	nucleus	47.4	39.61
Solyc10g050210.1.1	Tomato	nucleus	43.93	39.18
Solyc11g044560.1.1	Tomato	nucleus	44.8	38.85
KRH71134	Soybean	nucleus	49.13	38.72
PGSC0003DMT400015892	Potato	nucleus	45.38	37.92
KRH52003	Soybean	nucleus	35.55	37.39
AT4G34000.2	Thale cress	nucleus	48.27	36.78
AT1G49720.2	Thale cress	nucleus	41.33	35.48
Bra011485.1-P	Field mustard	nucleus	44.51	35.08
EES18419	Sorghum	nucleus	31.79	33.95
EES03785	Sorghum	nucleus	30.64	31.83
Bra017621.1-P	Field mustard	cytosol	26.88	31.21
AT5G42910.1	Thale cress	nucleus	33.24	31.08
KXG33733	Sorghum	nucleus	36.42	30.66
KXG39483	Sorghum	nucleus	20.81	29.51
CDX71528	Canola	nucleus	33.24	29.41
CDY22378	Canola	nucleus	33.24	29.11
EES03943	Sorghum	nucleus	21.97	29.01
OQU90534	Sorghum	nucleus	26.01	28.3
EES18296	Sorghum	nucleus, plastid	21.39	27.72
Bra033649.1-P	Field mustard	nucleus	32.66	27.29

Protein Annotations

Gene3D:1.20.5.170	MapMan:15.5.4.1	EntrezGene:8075201	ProteinID:AIS25791.1	UniProt:C5XSV4	ncoils:Coil
EnsemblPlants:EES07580	ProteinID:EES07580	ProteinID:EES07580.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006355	GO:GO:0006950	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009414	GO:GO:0009628	GO:GO:0009651	GO:GO:0009719
GO:GO:0009738	GO:GO:0009987	InterPro:IPR004827	PFAM:PF00170	ScanProsite:PS00036	PFscan:PS50217
PANTHER:PTHR22952	PANTHER:PTHR22952:SF103	SMART:SM00338	EnsemblPlantsGene:SORBI_3004G309600	SUPFAM:SSF57959	unigene:Sbi.11803
UniParc:UPI0001A86147	RefSeq:XP_002454604.1	InterPro:bZIP	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr4:-:64665419..64669547

Molecular Weight (calculated)

37553.2 Da

IEP (calculated)

9.773

GRAVY (calculated)

-0.487

Length

346 amino acids

Sequence
(BLAST)

001: MNFPGGSGRR QQQEPEHLPP MTPLPLARQG SVYSLTFDEF QSSLGGAAKD FGSMNMDELL RSIWSAEEIH NVAAANASAA DHAHAARASS IQRQGSLTLP
101: RTLSQKTVDE VWRDLVCVGG GPSAEAAAPP PPAQRQPTLG EITLEEFLVR AGVVREDMTA PPPVLPAPVC PPPPPQQTML FPHGDVFAPL VPPLQFGNGL
201: VSGAVGQQQG GGPAAPAVSP RPVTASGFGK MEGDDLSSLS PSPVPYVFGG GLRARKPPAM EKVVERRQRR MIKNRESAAR SRQRKQAYMM ELEAEVAKLK
301: EMNDELQKKQ VEMLEKQKNE VLERMRRQVG PTAKRICLRR TLTGPW

Best Arabidopsis Sequence Match ( AT3G19290.4 )
(BLAST)

001: MGTHINFNNL GGGGHPGGEG SSNQMKPTGS VMPLARQSSV YSLTFDELQN TLGGPGKDFG SMNMDELLKS IWTAEEAQAM AMTSAPAATA VAQPGAGIPP
101: PGGNLQRQGS LTLPRTISQK TVDEVWKCLI TKDGNMEGSS GGGGESNVPP GRQQTLGEMT LEEFLFRAGV VREDNCVQQM GQVNGNNNNG FYGNSTAAGG
201: LGFGFGQPNQ NSITFNGTND SMILNQPPGL GLKMGGTMQQ QQQQQQLLQQ QQQQMQQLNQ PHPQQRLPQT IFPKQANVAF SAPVNITNKG FAGAANNSIN
301: NNNGLASYGG TGVTVAATSP GTSSAENNSL SPVPYVLNRG RRSNTGLEKV IERRQRRMIK NRESAARSRA RKQAYTLELE AEIEKLKKTN QELQKKQAEM
401: VEMQKNEVIV

Arabidopsis Description

ABF4ABRE binding factor 4 [Source:UniProtKB/TrEMBL;Acc:F4JB53]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.