CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
endoplasmic reticulum 1
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d010638_P001	Maize	nucleus	90.43	85.17
VIT_04s0069g01150.t01	Wine grape	nucleus	13.27	75.44
TraesCS1B01G317100.1	Wheat	nucleus	74.07	74.53
TraesCS1A01G306300.1	Wheat	nucleus	73.46	73.46
Os05t0489700-01	Rice	nucleus	75.0	72.54
TraesCS1D01G306000.1	Wheat	nucleus	73.15	72.48
HORVU1Hr1G068760.1	Barley	nucleus	73.15	71.6
EES03785	Sorghum	nucleus	70.68	68.77
HORVU0Hr1G023640.4	Barley	nucleus	70.06	65.04
GSMUA_AchrUn_...	Banana	nucleus	52.16	61.68
GSMUA_Achr11P...	Banana	nucleus	45.06	60.08
VIT_13s0175g00120.t01	Wine grape	nucleus	55.25	55.08
KRH56272	Soybean	nucleus	50.62	51.9
KRH62689	Soybean	nucleus	50.62	51.9
KRH44714	Soybean	nucleus	50.62	50.77
KRH13203	Soybean	nucleus	47.22	50.66
VIT_12s0034g00110.t01	Wine grape	nucleus	14.2	46.46
KXG39483	Sorghum	nucleus	34.26	45.49
OQU90534	Sorghum	nucleus	39.2	39.94
EER96850	Sorghum	nucleus	37.96	33.61
OQU78764	Sorghum	nucleus	31.17	32.37
EES07580	Sorghum	nucleus	33.95	31.79
KXG19586	Sorghum	nucleus	33.95	31.61
OQU80633	Sorghum	nucleus	36.73	31.15
EES03943	Sorghum	nucleus	25.0	30.92
EES18296	Sorghum	nucleus, plastid	23.77	28.84
KXG33733	Sorghum	nucleus	35.49	27.98
Solyc01g009510.1.1	Tomato	nucleus	16.05	27.37
KXG26981	Sorghum	nucleus	13.89	27.27

Protein Annotations

Gene3D:1.20.5.170	MapMan:15.5.4.1	EntrezGene:8077030	UniProt:C5YZX9	ncoils:Coil	EnsemblPlants:EES18419
ProteinID:EES18419	ProteinID:EES18419.1	GO:GO:0003674	GO:GO:0003700	GO:GO:0006139	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR004827	PFAM:PF00170
ScanProsite:PS00036	PFscan:PS50217	PANTHER:PTHR22952	PANTHER:PTHR22952:SF137	SMART:SM00338	EnsemblPlantsGene:SORBI_3009G178800
SUPFAM:SSF57959	UniParc:UPI0001A88A5C	RefSeq:XP_002439989.1	InterPro:bZIP	SEG:seg	:

Description

hypothetical protein

Coordinates

chr9:+:53350284..53353445

Molecular Weight (calculated)

35040.2 Da

IEP (calculated)

6.318

GRAVY (calculated)

-0.659

Length

324 amino acids

Sequence
(BLAST)

001: MSSQTGGGRG SDAGSVQRGQ MQSLARQGSL YNLTLDEVQS HLGEPLLSMN FDELLKSVFP DGVDPDGAVS GKPDPTSSLQ RQGSIMMPLQ LSKKTVDEVW
101: KGIQGGPETS AAVDGRQRRE RQPTLGEMTL EDFLVKAGVV TEGHMKDSAD LQSNVDTVGS SVVVAGASSL NPGAQWLQQY QQQALGSQQP SLAGSYMASQ
201: LHPQPLSIAT GAIMDSIYSD GQITSPSFGA LSDPQTPGRK RGALGEVVDK VVERRQKRMI KNRESAARSR ARKQAYTNEL ENKVSRLEEE NERLKKQQEL
301: DEILSSAPPP EPKYQLRRTG SAAF

Best Arabidopsis Sequence Match ( AT3G56850.1 )
(BLAST)

001: MDSQRGIVEQ AKSQSLNRQS SLYSLTLDEV QNHLGSSGKA LGSMNLDELL KSVCSVEANQ PSSMAVNGGA AAQEGLSRQG SLTLPRDLSK KTVDEVWKDI
101: QQNKNGGSAH ERRDKQPTLG EMTLEDLLLK AGVVTETIPG SNHDGPVGGG SAGSGAGLGQ NITQVGPWIQ YHQLPSMPQP QAFMPYPVSD MQAMVSQSSL
201: MGGLSDTQTP GRKRVASGEV VEKTVERRQK RMIKNRESAA RSRARKQAYT HELEIKVSRL EEENERLRKQ KEVEKILPSV PPPDPKRQLR RTSSAPF

Arabidopsis Description

DPBF3ABSCISIC ACID-INSENSITIVE 5-like protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LES3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.