Factsheet for HORVU1Hr1G068760.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G317100.1	Wheat	nucleus	90.63	93.17
TraesCS1D01G306000.1	Wheat	nucleus	91.84	92.97
TraesCS1A01G306300.1	Wheat	nucleus	90.03	91.98
HORVU0Hr1G023640.4	Barley	nucleus	93.35	88.54
VIT_04s0069g01150.t01	Wine grape	nucleus	13.29	77.19
Os05t0489700-01	Rice	nucleus	75.53	74.63
EES18419	Sorghum	nucleus	71.6	73.15
Zm00001d010638_P001	Maize	nucleus	68.88	66.28
GSMUA_AchrUn_...	Banana	nucleus	51.96	62.77
GSMUA_Achr11P...	Banana	nucleus	44.71	60.91
HORVU3Hr1G079640.5	Barley	nucleus	59.52	58.46
VIT_13s0175g00120.t01	Wine grape	nucleus	54.98	56.0
HORVU2Hr1G017020.2	Barley	nucleus	18.43	54.46
KRH44714	Soybean	nucleus	50.15	51.39
KRH13203	Soybean	nucleus	46.53	50.99
KRH62689	Soybean	nucleus	48.04	50.32
KRH56272	Soybean	nucleus	47.73	50.0
HORVU5Hr1G045180.1	Barley	nucleus	45.02	47.6
VIT_12s0034g00110.t01	Wine grape	nucleus	14.2	47.47
HORVU7Hr1G035500.2	Barley	nucleus	32.93	32.73
HORVU5Hr1G068230.1	Barley	nucleus	34.14	30.79
HORVU3Hr1G083250.2	Barley	nucleus	20.54	30.77
Solyc01g009510.1.1	Tomato	nucleus	16.01	27.89
HORVU6Hr1G080670.1	Barley	nucleus	29.91	27.73
HORVU1Hr1G074960.8	Barley	mitochondrion, nucleus, plastid	19.64	25.9
HORVU3Hr1G084360.2	Barley	nucleus	32.93	25.77

Protein Annotations

Gene3D:1.20.5.170	MapMan:15.5.4.1	EMBL:AK356892	EMBL:AK368735	ncoils:Coil	UniProt:F2CZ36
GO:GO:0003674	GO:GO:0003700	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:HORVU1Hr1G068760	EnsemblPlants:HORVU1Hr1G068760.1	InterPro:IPR004827	PFAM:PF00170
ScanProsite:PS00036	PFscan:PS50217	PANTHER:PTHR22952	PANTHER:PTHR22952:SF137	SMART:SM00338	SUPFAM:SSF57959
UniParc:UPI0002005593	InterPro:bZIP	SEG:seg	:	:	:

Description

Predicted protein [Source:UniProtKB/TrEMBL;Acc:F2CZ36]

Coordinates

chrchr1H:+:482059906..482063692

Molecular Weight (calculated)

35999.9 Da

IEP (calculated)

7.758

GRAVY (calculated)

-0.694

Length

331 amino acids

Sequence
(BLAST)

001: MIQAMASQSQ AGGGGTGCYA GPGQREQPQG LARQGSLYSL TLDEVQSQLT EPLLSMNLDE LLKSVFPEGM DPVGGVAGQS EPTLGLHRQG SITMPPELSK
101: KTVDEVWKGI QDSPKRSGEE GSRRRRERQP TFGEMTLEDF LVKAGVVAEG HLKDSMDLPA NMGAIGSSVI AAAAPSLNPG AHWLQQYQQQ TLEPQHPSMA
201: GPFMAGHLGP RPLAVATGAI MESIYPDGQI TSPMLDAHSD PQTPGRKRGA SDGIPDKVVE RRQKRMIKNR ESAARSRARK QAYTNELENK VSRLEEENER
301: LKKQKELEMM ITSAPPPEPK YQLRRTSSAP V

Best Arabidopsis Sequence Match ( AT3G56850.1 )
(BLAST)

001: MDSQRGIVEQ AKSQSLNRQS SLYSLTLDEV QNHLGSSGKA LGSMNLDELL KSVCSVEANQ PSSMAVNGGA AAQEGLSRQG SLTLPRDLSK KTVDEVWKDI
101: QQNKNGGSAH ERRDKQPTLG EMTLEDLLLK AGVVTETIPG SNHDGPVGGG SAGSGAGLGQ NITQVGPWIQ YHQLPSMPQP QAFMPYPVSD MQAMVSQSSL
201: MGGLSDTQTP GRKRVASGEV VEKTVERRQK RMIKNRESAA RSRARKQAYT HELEIKVSRL EEENERLRKQ KEVEKILPSV PPPDPKRQLR RTSSAPF

Arabidopsis Description

DPBF3ABSCISIC ACID-INSENSITIVE 5-like protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LES3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.