Factsheet for TraesCS1D01G306000.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G317100.1	Wheat	nucleus	96.33	97.83
TraesCS1A01G306300.1	Wheat	nucleus	96.02	96.91
HORVU1Hr1G068760.1	Barley	nucleus	92.97	91.84
HORVU0Hr1G023640.4	Barley	nucleus	87.46	81.95
VIT_04s0069g01150.t01	Wine grape	nucleus	13.46	77.19
Os05t0489700-01	Rice	nucleus	76.45	74.63
EES18419	Sorghum	nucleus	72.48	73.15
Zm00001d010638_P001	Maize	nucleus	70.03	66.57
GSMUA_AchrUn_...	Banana	nucleus	52.91	63.14
TraesCS3D01G330300.1	Wheat	nucleus	63.3	61.42
GSMUA_Achr11P...	Banana	nucleus	44.95	60.49
VIT_13s0175g00120.t01	Wine grape	nucleus	55.96	56.31
KRH44714	Soybean	nucleus	50.76	51.39
KRH13203	Soybean	nucleus	47.09	50.99
KRH62689	Soybean	nucleus	48.62	50.32
TraesCS4D01G177700.1	Wheat	nucleus	34.25	50.22
KRH56272	Soybean	nucleus	48.32	50.0
TraesCS2D01G098700.1	Wheat	nucleus	41.59	50.0
VIT_12s0034g00110.t01	Wine grape	nucleus	14.37	47.47
TraesCS5D01G150700.1	Wheat	nucleus	43.43	44.94
TraesCS3D01G371900.1	Wheat	nucleus	24.46	32.0
TraesCS5D01G244500.1	Wheat	nucleus	35.47	31.69
TraesCS7D01G171300.1	Wheat	nucleus	32.42	30.72
TraesCS1D01G273100.1	Wheat	nucleus	22.94	29.76
Solyc01g009510.1.1	Tomato	nucleus	16.51	28.42
TraesCS3D01G364900.1	Wheat	nucleus	33.33	27.95
TraesCS6D01G312800.1	Wheat	nucleus	29.97	27.22
TraesCS3D01G365500.1	Wheat	nucleus	29.97	25.59
TraesCS3D01G365000.1	Wheat	nucleus	30.58	25.25

Protein Annotations

Gene3D:1.20.5.170	MapMan:15.5.4.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003700	GO:GO:0006139
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR004827
PFAM:PF00170	ScanProsite:PS00036	PFscan:PS50217	PANTHER:PTHR22952	PANTHER:PTHR22952:SF137	SMART:SM00338
SUPFAM:SSF57959	EnsemblPlantsGene:TraesCS1D01G306000	EnsemblPlants:TraesCS1D01G306000.1	InterPro:bZIP	TIGR:cd14707	SEG:seg

Description

No Description!

Coordinates

chr1D:+:403273875..403277119

Molecular Weight (calculated)

35403.2 Da

IEP (calculated)

7.188

GRAVY (calculated)

-0.639

Length

327 amino acids

Sequence
(BLAST)

001: MIQAMASQSQ AGGGGGGGYA GPGQHGQAQG LARQGSLYSL TLDEVQSQLT EPLLSMNLDE LLKSVFPDGV DPVGGVAGQS EPALGLHRQG SITMPPELSK
101: KTVDEVWKGI QDSPKRSGEE GSQRRRERQP TFGEMTLEDF LVKAGVVAEG HLKDLIDLPA NMGAVGRSVI EAAAPSLNPG AHWLQQYLEP QHPSMAGPFM
201: ASHLGPQPLS VATGAIMEPI YPDGQITSPM LDALSDPQTP RRKRGASDGV TDKVVERRQK RMIKNRESAA RSRARKQAYT NELENKVSRL EEENERLKKQ
301: KELDMMITSA PPPEPKYQLR RTSSAPV

Best Arabidopsis Sequence Match ( AT3G56850.1 )
(BLAST)

001: MDSQRGIVEQ AKSQSLNRQS SLYSLTLDEV QNHLGSSGKA LGSMNLDELL KSVCSVEANQ PSSMAVNGGA AAQEGLSRQG SLTLPRDLSK KTVDEVWKDI
101: QQNKNGGSAH ERRDKQPTLG EMTLEDLLLK AGVVTETIPG SNHDGPVGGG SAGSGAGLGQ NITQVGPWIQ YHQLPSMPQP QAFMPYPVSD MQAMVSQSSL
201: MGGLSDTQTP GRKRVASGEV VEKTVERRQK RMIKNRESAA RSRARKQAYT HELEIKVSRL EEENERLRKQ KEVEKILPSV PPPDPKRQLR RTSSAPF

Arabidopsis Description

DPBF3ABSCISIC ACID-INSENSITIVE 5-like protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LES3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.