Factsheet for TraesCS1B01G317100.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
nucleus 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 26252567

gfp PMID: 26252567 doi

C Li, H Lin, J Dubcovsky

Department Plant Sciences, University of California, Davis, CA, USA., Gordon and Betty Moore Foundation, Palo Alto, CA, USA., Howard Hughes Medical Institute, Chevy Chase, MD, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1A01G306300.1	Wheat	nucleus	98.14	97.53
TraesCS1D01G306000.1	Wheat	nucleus	97.83	96.33
HORVU1Hr1G068760.1	Barley	nucleus	93.17	90.63
HORVU0Hr1G023640.4	Barley	nucleus	87.58	80.8
VIT_04s0069g01150.t01	Wine grape	nucleus	13.66	77.19
EES18419	Sorghum	nucleus	74.53	74.07
Os05t0489700-01	Rice	nucleus	77.02	74.03
Zm00001d010638_P001	Maize	nucleus	71.12	66.57
GSMUA_AchrUn_...	Banana	nucleus	53.42	62.77
TraesCS3B01G368300.1	Wheat	nucleus	65.22	61.22
GSMUA_Achr11P...	Banana	nucleus	45.96	60.91
VIT_13s0175g00120.t01	Wine grape	nucleus	56.21	55.69
KRH44714	Soybean	nucleus	51.55	51.39
KRH13203	Soybean	nucleus	47.83	50.99
KRH62689	Soybean	nucleus	49.38	50.32
TraesCS5B01G139800.1	Wheat	nucleus	48.76	50.16
KRH56272	Soybean	nucleus	49.07	50.0
TraesCS2B01G115700.1	Wheat	nucleus	41.93	49.27
TraesCS4B01G175800.1	Wheat	nucleus	34.16	48.89
VIT_12s0034g00110.t01	Wine grape	nucleus	14.6	47.47
TraesCS3B01G411300.1	Wheat	nucleus	24.53	31.6
TraesCS7B01G075600.1	Wheat	nucleus	32.92	31.18
TraesCS5B01G235600.2	Wheat	nucleus	35.4	31.15
TraesCS1B01G282800.1	Wheat	nucleus	23.29	29.76
Solyc01g009510.1.1	Tomato	nucleus	16.77	28.42
TraesCS6B01G364000.1	Wheat	nucleus	30.43	27.92
TraesCS3B01G404600.1	Wheat	nucleus	33.54	27.91
TraesCS3B01G404300.1	Wheat	nucleus	32.92	27.11
TraesCS3B01G404200.1	Wheat	nucleus	32.61	26.92
TraesCS3B01G404400.1	Wheat	nucleus	32.3	26.6
TraesCS3B01G404500.1	Wheat	nucleus	32.3	26.6

Protein Annotations

Gene3D:1.20.5.170	MapMan:15.5.4.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003700	GO:GO:0006139
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR004827
PFAM:PF00170	ScanProsite:PS00036	PFscan:PS50217	PANTHER:PTHR22952	PANTHER:PTHR22952:SF137	SMART:SM00338
SUPFAM:SSF57959	EnsemblPlantsGene:TraesCS1B01G317100	EnsemblPlants:TraesCS1B01G317100.1	InterPro:bZIP	TIGR:cd14707	SEG:seg

Description

No Description!

Coordinates

chr1B:+:542135631..542138903

Molecular Weight (calculated)

34790.4 Da

IEP (calculated)

8.771

GRAVY (calculated)

-0.681

Length

322 amino acids

Sequence
(BLAST)

001: MASQSQAGGG GGGGYAGPGQ RGQAQGLARQ GSLYSLTLDE VQSQLTEPLL SMNLDELLKS VFPDGVDPVG GVAGQSEPAP GLHRQGSITM PPELSKKTVD
101: EVWKGIQDSP KRSGEEGIRR RRERQPTFGE MTLEDFLVKA GVVAEGHLKD PIDLPANMGA VGSSVTAAAP SLNPGAHWLQ QYLEPQHPSM AGPFMASHLG
201: PQPLSVATGA IMEPIYPDGQ ITSPMLDALS DPQTPRRKRG ASDGVTDKVV ERRQKRMIKN RESAARSRAR KQAYTNELEN KVSRLEEENE RLKKQKELDM
301: MITSAPPPEP KYQLRRTSSA PV

Best Arabidopsis Sequence Match ( AT3G56850.1 )
(BLAST)

001: MDSQRGIVEQ AKSQSLNRQS SLYSLTLDEV QNHLGSSGKA LGSMNLDELL KSVCSVEANQ PSSMAVNGGA AAQEGLSRQG SLTLPRDLSK KTVDEVWKDI
101: QQNKNGGSAH ERRDKQPTLG EMTLEDLLLK AGVVTETIPG SNHDGPVGGG SAGSGAGLGQ NITQVGPWIQ YHQLPSMPQP QAFMPYPVSD MQAMVSQSSL
201: MGGLSDTQTP GRKRVASGEV VEKTVERRQK RMIKNRESAA RSRARKQAYT HELEIKVSRL EEENERLRKQ KEVEKILPSV PPPDPKRQLR RTSSAPF

Arabidopsis Description

DPBF3ABSCISIC ACID-INSENSITIVE 5-like protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LES3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.