Factsheet for TraesCS3B01G404400.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS3B01G594200.1
TraesCS3D01G532000.1
TraesCS4A01G057800.1
TraesCS4A01G058100.1
TraesCS4B01G246800.1
TraesCS4B01G247000.1
TraesCS4D01G246100.2
TraesCS4D01G246400.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G44460.1	TraesCS3B01G594200.1	AT1G13740.1	18484180
AT3G44460.1	TraesCS3D01G532000.1	AT1G13740.1	18484180
AT3G44460.1	TraesCS4A01G057800.1	AT1G13740.1	18484180
AT3G44460.1	TraesCS4A01G058100.1	AT1G13740.1	18484180
AT3G44460.1	TraesCS4B01G246800.1	AT1G13740.1	18484180
AT3G44460.1	TraesCS4B01G247000.1	AT1G13740.1	18484180
AT3G44460.1	TraesCS4D01G246100.2	AT1G13740.1	18484180
AT3G44460.1	TraesCS4D01G246400.1	AT1G13740.1	18484180
AT3G44460.1	TraesCS3B01G594200.1	AT1G69260.1	18484180
AT3G44460.1	TraesCS3D01G532000.1	AT1G69260.1	18484180
AT3G44460.1	TraesCS4A01G057800.1	AT1G69260.1	18484180
AT3G44460.1	TraesCS4A01G058100.1	AT1G69260.1	18484180
AT3G44460.1	TraesCS4B01G246800.1	AT1G69260.1	18484180
AT3G44460.1	TraesCS4B01G247000.1	AT1G69260.1	18484180
AT3G44460.1	TraesCS4D01G246100.2	AT1G69260.1	18484180
AT3G44460.1	TraesCS4D01G246400.1	AT1G69260.1	18484180
AT3G44460.1	TraesCS3B01G594200.1	AT3G02140.1	18484180
AT3G44460.1	TraesCS3D01G532000.1	AT3G02140.1	18484180
AT3G44460.1	TraesCS4A01G057800.1	AT3G02140.1	18484180
AT3G44460.1	TraesCS4A01G058100.1	AT3G02140.1	18484180
AT3G44460.1	TraesCS4B01G246800.1	AT3G02140.1	18484180
AT3G44460.1	TraesCS4B01G247000.1	AT3G02140.1	18484180
AT3G44460.1	TraesCS4D01G246100.2	AT3G02140.1	18484180
AT3G44460.1	TraesCS4D01G246400.1	AT3G02140.1	18484180
AT3G44460.1	TraesCS3B01G594200.1	AT3G29575.1	18484180
AT3G44460.1	TraesCS3D01G532000.1	AT3G29575.1	18484180
AT3G44460.1	TraesCS4A01G057800.1	AT3G29575.1	18484180
AT3G44460.1	TraesCS4A01G058100.1	AT3G29575.1	18484180
AT3G44460.1	TraesCS4B01G246800.1	AT3G29575.1	18484180
AT3G44460.1	TraesCS4B01G247000.1	AT3G29575.1	18484180
AT3G44460.1	TraesCS4D01G246100.2	AT3G29575.1	18484180
AT3G44460.1	TraesCS4D01G246400.1	AT3G29575.1	18484180

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G404500.1	Wheat	nucleus	95.4	95.4
TraesCS3B01G404300.1	Wheat	nucleus	91.56	91.56
TraesCS3B01G404200.1	Wheat	nucleus	90.54	90.77
TraesCS3D01G364900.1	Wheat	nucleus	89.77	90.0
TraesCS3B01G404600.1	Wheat	nucleus	88.24	89.15
TraesCS3A01G371900.3	Wheat	nucleus	79.28	81.15
TraesCS3D01G365500.1	Wheat	nucleus	79.03	80.68
TraesCS3D01G365000.1	Wheat	nucleus	81.33	80.3
TraesCS3A01G372200.1	Wheat	nucleus	76.73	78.53
TraesCS3A01G372000.1	Wheat	nucleus	76.73	78.33
TraesCS3A01G372100.2	Wheat	nucleus	77.49	77.49
HORVU3Hr1G084360.2	Barley	nucleus	79.03	73.05
Os01t0859300-01	Rice	nucleus	54.22	65.63
KXG33733	Sorghum	nucleus	59.59	56.69
Zm00001d012296_P001	Maize	nucleus	59.34	56.31
Zm00001d042779_P001	Maize	nucleus	52.17	53.26
KRH22688	Soybean	nucleus	30.69	35.71
KRG96191	Soybean	nucleus	35.04	35.4
CDX75056	Canola	nucleus	36.06	35.34
CDX84141	Canola	nucleus	35.55	35.28
VIT_06s0080g00340.t01	Wine grape	nucleus	29.16	35.19
GSMUA_Achr8P07740_001	Banana	nucleus	31.2	35.16
GSMUA_Achr3P22710_001	Banana	nucleus	30.69	34.19
AT3G44460.1	Thale cress	nucleus	28.64	33.84
Bra017251.1-P	Field mustard	nucleus	34.02	33.59
Bra019436.1-P	Field mustard	nucleus	28.64	33.33
PGSC0003DMT400006851	Potato	nucleus	36.32	33.18
CDY43738	Canola	nucleus	34.27	33.17
Solyc09g009490.2.1	Tomato	nucleus	36.06	33.1
VIT_08s0007g03420.t01	Wine grape	nucleus	33.76	33.0
CDY10500	Canola	nucleus	29.16	32.95
TraesCS7B01G075600.1	Wheat	nucleus	28.64	32.94
Bra005287.1-P	Field mustard	nucleus	36.83	32.88
AT2G36270.3	Thale cress	nucleus	36.83	32.43
CDY08701	Canola	nucleus	28.64	32.37
TraesCS1B01G317100.1	Wheat	nucleus	26.6	32.3
TraesCS6B01G364000.1	Wheat	nucleus	28.9	32.19
TraesCS4B01G175800.1	Wheat	nucleus	18.16	31.56
TraesCS5B01G235600.2	Wheat	nucleus	29.41	31.42
TraesCS1B01G282800.1	Wheat	nucleus	20.2	31.35
TraesCS3B01G368300.1	Wheat	nucleus	27.11	30.9
KRH32737	Soybean	nucleus	35.04	30.65
KRH37750	Soybean	nucleus	16.37	30.33
TraesCS2B01G115700.1	Wheat	nucleus	21.23	30.29
TraesCS3B01G411300.1	Wheat	nucleus	18.93	29.6
KRH20056	Soybean	nucleus	35.55	28.14
TraesCS5B01G139800.1	Wheat	nucleus	22.25	27.8
KRH26633	Soybean	mitochondrion	29.67	18.01

Protein Annotations

Gene3D:1.20.5.170	MapMan:15.5.4.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003700	GO:GO:0006139
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR004827
PFAM:PF07716	ScanProsite:PS00036	PFscan:PS50217	PANTHER:PTHR22952	PANTHER:PTHR22952:SF187	SMART:SM00338
SUPFAM:SSF57959	EnsemblPlantsGene:TraesCS3B01G404400	EnsemblPlants:TraesCS3B01G404400.1	InterPro:bZIP	TIGR:cd14707	SEG:seg

Description

No Description!

Coordinates

chr3B:+:639399085..639400939

Molecular Weight (calculated)

41798.0 Da

IEP (calculated)

5.177

GRAVY (calculated)

-0.459

Length

391 amino acids

Sequence
(BLAST)

001: MASEMSNDVK FSEEEVTSHP PVLEGEEQTV VAPAQQYSIF ALTLDELQYS VCEAGRNFGS MNMDEFMSNI WNAEEFQAAT GGGLVGMEMA PVVGAGGGGG
101: GGDAGGSNLA RQESFSLPPP LCEKMVEEVW AEINREPCPV HAQPQAAQPS QQPPVQPSVK ANNRQGTLGE MTLEQFLVKA GVVRGSGSGG QAPVPVDMVH
201: GQMNPAQQGQ QPGPMMYPMA PANGMFPVMG DGMGFIPNGY AGIVVVRPPP PPQGGVGIVS PGSSDGRSAM TQADMMNCMG DGAMMESGGT RKRGASEDPS
301: CERSIERRHR RMIKNGESAA RSRARKQAFT VELEAELNHL KEENARLKAE EKIILLTKKQ MLVKKMIEQS KENVNAKKGS TLSRRCGSCI W

Best Arabidopsis Sequence Match ( AT2G36270.1 )
(BLAST)

001: MVTRETKLTS EREVESSMAQ ARHNGGGGGE NHPFTSLGRQ SSIYSLTLDE FQHALCENGK NFGSMNMDEF LVSIWNAEEN NNNQQQAAAA AGSHSVPANH
101: NGFNNNNNNG GEGGVGVFSG GSRGNEDANN KRGIANESSL PRQGSLTLPA PLCRKTVDEV WSEIHRGGGS GNGGDSNGRS SSSNGQNNAQ NGGETAARQP
201: TFGEMTLEDF LVKAGVVREH PTNPKPNPNP NQNQNPSSVI PAAAQQQLYG VFQGTGDPSF PGQAMGVGDP SGYAKRTGGG GYQQAPPVQA GVCYGGGVGF
301: GAGGQQMGMV GPLSPVSSDG LGHGQVDNIG GQYGVDMGGL RGRKRVVDGP VEKVVERRQR RMIKNRESAA RSRARKQAYT VELEAELNQL KEENAQLKHA
401: LAELERKRKQ QYFESLKSRA QPKLPKSNGR LRTLMRNPSC PL

Arabidopsis Description

ABI5Basic-leucine zipper (bZIP) transcription factor family protein [Source:TAIR;Acc:AT2G36270]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.