Factsheet for VIT_06s0080g00340.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
endoplasmic reticulum 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_01s0011g00410.t01
VIT_14s0068g00300.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G44460.1	VIT_01s0011g00410.t01	AT1G13740.1	18484180
AT3G44460.1	VIT_01s0011g00410.t01	AT1G69260.1	18484180
AT3G44460.1	VIT_14s0068g00300.t01	AT3G02140.1	18484180
AT3G44460.1	VIT_14s0068g00300.t01	AT3G29575.1	18484180

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_04s0069g01150.t01	Wine grape	nucleus	9.88	56.14
AT3G44460.1	Thale cress	nucleus	37.35	36.56
Bra019436.1-P	Field mustard	nucleus	36.73	35.42
VIT_12s0034g00110.t01	Wine grape	nucleus	10.8	35.35
KRH22688	Soybean	nucleus	36.42	35.12
VIT_06s0009g01790.t01	Wine grape	nucleus	26.85	35.08
CDY10500	Canola	nucleus	37.35	34.97
CDY08701	Canola	nucleus	36.73	34.39
VIT_08s0007g03420.t01	Wine grape	nucleus	40.43	32.75
PGSC0003DMT400006851	Potato	nucleus	43.21	32.71
KRH37750	Soybean	nucleus	21.3	32.7
Solyc09g009490.2.1	Tomato	nucleus	42.9	32.63
GSMUA_Achr8P07740_001	Banana	nucleus	34.88	32.56
GSMUA_Achr3P22710_001	Banana	nucleus	34.26	31.62
TraesCS3A01G371800.1	Wheat	nucleus	36.73	30.43
Os01t0859300-01	Rice	nucleus	30.25	30.34
TraesCS3D01G364900.1	Wheat	nucleus	36.42	30.26
VIT_13s0175g00120.t01	Wine grape	nucleus	30.25	30.15
TraesCS3B01G404600.1	Wheat	nucleus	35.8	29.97
TraesCS3B01G404300.1	Wheat	nucleus	36.11	29.92
TraesCS3B01G404200.1	Wheat	nucleus	35.8	29.74
TraesCS3B01G404400.1	Wheat	nucleus	35.19	29.16
TraesCS3B01G404500.1	Wheat	nucleus	34.57	28.64
VIT_12s0055g00420.t01	Wine grape	nucleus	26.23	28.43
TraesCS3A01G372000.1	Wheat	nucleus	33.33	28.2
TraesCS3A01G372200.1	Wheat	nucleus	32.72	27.75
KXG33733	Sorghum	nucleus	35.19	27.74
HORVU3Hr1G084360.2	Barley	nucleus	36.11	27.66
TraesCS3A01G371900.3	Wheat	nucleus	32.41	27.49
VIT_03s0063g00310.t01	Wine grape	nucleus	34.57	27.38
TraesCS3D01G365500.1	Wheat	nucleus	32.1	27.15
VIT_18s0001g10450.t01	Wine grape	nucleus	37.35	27.07
TraesCS3D01G365000.1	Wheat	nucleus	33.02	27.02
Zm00001d012296_P001	Maize	nucleus	34.26	26.94
TraesCS3A01G372100.2	Wheat	nucleus	32.1	26.6
VIT_18s0072g00470.t01	Wine grape	nucleus, plastid	22.53	26.55
VIT_18s0001g04500.t01	Wine grape	nucleus	24.69	25.72
Zm00001d042779_P001	Maize	nucleus	29.94	25.33
KRH26633	Soybean	mitochondrion	35.8	18.01

Protein Annotations

Gene3D:1.20.5.170	MapMan:15.5.4.1	ProteinID:CBI28329	ProteinID:CBI28329.3	ncoils:Coil	UniProt:D7TCV6
EMBL:FN595757	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0033613
GO:GO:0045893	InterPro:IPR004827	PFAM:PF00170	ScanProsite:PS00036	PFscan:PS50217	PANTHER:PTHR22952
PANTHER:PTHR22952:SF119	SMART:SM00338	SUPFAM:SSF57959	UniParc:UPI00015CBF10	ArrayExpress:VIT_06s0080g00340	EnsemblPlantsGene:VIT_06s0080g00340
EnsemblPlants:VIT_06s0080g00340.t01	InterPro:bZIP	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr6:+:20262007..20263157

Molecular Weight (calculated)

36242.5 Da

IEP (calculated)

5.012

GRAVY (calculated)

-0.656

Length

324 amino acids

Sequence
(BLAST)

001: MVVSESDSGK VKPKSPPQLH QEDSLFPAPI RQNSVFSLTL DEYQVRSGKS FGSMNMDELI NSIWNGDENI LYSVSSQDEP NNDKHMADQT DLPRQASFSI
101: PPPLCKKTID EVWSEINKNK QQQNSNNNGS NDSVQGEQTF GEMTLEDFLV KAGVVQDVFV EEASGSSKRH MLTPTQRSGS FPNNNTNLET TFGIGNMMGL
201: EFSASQNSGN NLSSNDLAAY LAQGNKFPGE KRTTDGTLEM AVERRQRRMI KNRESAARSR ARKQAYTVEL ELELNQLKEE NTKLKKIVVR VDACLSENIQ
301: EENLFTPLAL FLTCVCLCKH FSLV

Best Arabidopsis Sequence Match ( AT3G44460.1 )
(BLAST)

001: MSVFESETSN FHVYNNHEIQ TQPQMQTFLS EEEPVGRQNS ILSLTLDEIQ MKSGKSFGAM NMDEFLANLW TTVEENDNEG GGAHNDGEKP AVLPRQGSLS
101: LPVPLCKKTV DEVWLEIQNG VQQHPPSSNS GQNSAENIRR QQTLGEITLE DFLVKAGVVQ EPLKTTMRMS SSDFGYNPEF GVGLHCQNQN NYGDNRSVYS
201: ENRPFYSVLG ESSSCMTGNG RSNQYLTGLD AFRIKKRIID GPPEILMERR QRRMIKNRES AARSRARRQA YTVELELELN NLTEENTKLK EIVEENEKKR
301: RQEIISRSKQ VTKEKSGDKL RKIRRMASAG W

Arabidopsis Description

DPBF2ABSCISIC ACID-INSENSITIVE 5-like protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8RYD6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.