Factsheet for VIT_12s0055g00420.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
endoplasmic reticulum 1
mitochondrion 1
plastid 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH10463	Soybean	nucleus	25.75	59.23
KRH43979	Soybean	nucleus	31.1	58.12
PGSC0003DMT400076576	Potato	nucleus	51.84	54.58
VIT_04s0069g01150.t01	Wine grape	nucleus	10.37	54.39
Solyc01g104650.2.1	Tomato	nucleus	53.18	53.54
VIT_18s0072g00470.t01	Wine grape	nucleus, plastid	45.48	49.45
GSMUA_Achr3P22470_001	Banana	nucleus	41.81	48.83
GSMUA_Achr9P08900_001	Banana	nucleus	40.13	48.39
KRH58352	Soybean	nucleus	35.79	47.77
GSMUA_Achr2P20490_001	Banana	nucleus	38.8	47.74
KRH42235	Soybean	nucleus, plastid	37.79	47.28
GSMUA_Achr10P...	Banana	nucleus	39.46	44.19
Zm00001d042721_P001	Maize	nucleus	37.79	43.46
HORVU3Hr1G083250.2	Barley	nucleus	32.11	43.44
EES03943	Sorghum	nucleus	37.46	42.75
TraesCS3B01G411300.1	Wheat	nucleus	35.45	42.4
TraesCS1B01G282800.1	Wheat	nucleus	35.45	42.06
TraesCS1D01G273100.1	Wheat	nucleus	35.45	42.06
TraesCS3D01G371900.1	Wheat	nucleus	35.12	42.0
TraesCS1A01G273000.1	Wheat	nucleus	35.45	41.9
TraesCS3A01G378700.1	Wheat	nucleus	35.79	41.63
Os01t0867300-01	Rice	nucleus	36.45	40.98
Zm00001d038311_P001	Maize	nucleus	33.44	39.37
Os05t0437700-01	Rice	plastid	32.44	39.27
EES18296	Sorghum	nucleus, plastid	33.78	37.83
Zm00001d012273_P001	Maize	plastid	30.77	37.7
HORVU1Hr1G074960.8	Barley	mitochondrion, nucleus, plastid	31.1	37.05
VIT_12s0034g00110.t01	Wine grape	nucleus	10.7	32.32
VIT_06s0009g01790.t01	Wine grape	nucleus	25.75	31.05
VIT_13s0175g00120.t01	Wine grape	nucleus	31.44	28.92
VIT_06s0080g00340.t01	Wine grape	nucleus	28.43	26.23
VIT_08s0007g03420.t01	Wine grape	nucleus	33.11	24.75
VIT_18s0001g04500.t01	Wine grape	nucleus	25.42	24.44
VIT_03s0063g00310.t01	Wine grape	nucleus	32.44	23.72
VIT_18s0001g10450.t01	Wine grape	nucleus	34.11	22.82

Protein Annotations

Gene3D:1.20.5.170	EntrezGene:100250466	wikigene:100250466	MapMan:15.5.4.1	EMBL:AM443295	ProteinID:CAN65151
ProteinID:CAN65151.1	ProteinID:CCB46135	ProteinID:CCB46135.1	ncoils:Coil	UniProt:F6H1R6	EMBL:FN595228
GO:GO:0003674	GO:GO:0003700	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	InterPro:IPR004827	EntrezGene:LOC100250466	wikigene:LOC100250466	PFAM:PF00170
ScanProsite:PS00036	PFscan:PS50217	PANTHER:PTHR22952	PANTHER:PTHR22952:SF175	SMART:SM00338	SUPFAM:SSF57959
UniParc:UPI00019845E3	ArrayExpress:VIT_12s0055g00420	EnsemblPlantsGene:VIT_12s0055g00420	EnsemblPlants:VIT_12s0055g00420.t01	RefSeq:XP_002266344	RefSeq:XP_002266344.1
InterPro:bZIP	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr12:+:13276799..13300251

Molecular Weight (calculated)

32477.2 Da

IEP (calculated)

6.149

GRAVY (calculated)

-0.639

Length

299 amino acids

Sequence
(BLAST)

001: MASSKVMAST ASTNSDLPRQ SSICSLTIAE LQSDQNKNFG SMNMDDLLKN IYGDNLSPES FSTAAGNNGD GGGGGVGGVD EGGSLSRQGS FSLSRQGSFS
101: LPKSVGNKTV DEVWKEIVAG NDQRRVGAGE ALEEMTLEDF LAKAGAVREE DVRVQVMGGA GSYGVDAMMN GQFQAPQMQA QGVDGAMVAF GNGIDGRVTG
201: AGRGKRRAVE EPVDKATQQR QRRMIKNRES AARSRERKQA YTVELESLVT HLEEENARLL REEAEQSKER YKQLMENLVP VVEKRRPPRV LRRVQSVLW

Best Arabidopsis Sequence Match ( AT5G44080.1 )
(BLAST)

001: MTSFQVMRSS NSRNSDLSRR ISSASTSSSS IRPQQQFRRD LTSVGYGGRN DGLYSSNSMT VEGILHDTFA SDPPAPTESS LLDASINLMD ASPAPMEITT
101: TTASDVVDHG GGTETTRGGK SVDEIWREMV SGEGKGMKEE TSEEIMTLED FLAKAAVEDE TAVTASAEDL DVKIPVTNYG FDHSAPPHNP FQMIDKVEGS
201: IVAFGNGLDV YGGGARGKRA RVMVEPLDKA AAQRQRRMIK NRESAARSRE RKQAYQVELE ALAAKLEEEN ELLSKEIEDK RKERYQKLME FVIPVVEKPK
301: QQPPRFLRRI RSLEW

Arabidopsis Description

Basic leucine zipper transcription factor [Source:UniProtKB/TrEMBL;Acc:Q9FNB9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.