Factsheet for VIT_18s0001g10450.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
endoplasmic reticulum 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH61298	Soybean	nucleus	60.85	65.23
KRH52003	Soybean	nucleus	45.86	62.31
VIT_03s0063g00310.t01	Wine grape	nucleus	56.38	61.61
VIT_04s0069g01150.t01	Wine grape	nucleus	7.83	61.4
GSMUA_Achr6P30550_001	Banana	nucleus	51.45	57.79
GSMUA_Achr5P05690_001	Banana	nucleus	51.23	56.27
Os06t0211200-01	Rice	nucleus	40.49	55.86
GSMUA_Achr5P24570_001	Banana	nucleus	48.32	55.67
EES07580	Sorghum	nucleus	42.73	55.2
Os02t0766700-01	Rice	nucleus	43.85	54.9
TraesCS6B01G364000.1	Wheat	nucleus	42.73	54.42
GSMUA_Achr9P27130_001	Banana	nucleus	48.99	54.34
HORVU6Hr1G080670.1	Barley	nucleus	43.18	54.06
TraesCS6A01G333600.2	Wheat	nucleus	42.28	54.0
Os08t0472000-01	Rice	nucleus	38.26	53.77
GSMUA_Achr6P04270_001	Banana	nucleus	45.41	53.0
Zm00001d018178_P001	Maize	nucleus	41.61	52.99
TraesCS6D01G312800.1	Wheat	nucleus	42.51	52.78
GSMUA_Achr3P07000_001	Banana	nucleus	47.2	52.36
OQU80633	Sorghum	nucleus	44.52	52.09
HORVU7Hr1G035500.2	Barley	nucleus	38.7	51.95
OQU78764	Sorghum	nucleus	36.24	51.92
TraesCS7B01G075600.1	Wheat	nucleus	38.93	51.18
Zm00001d037170_P001	Maize	nucleus	38.26	50.59
TraesCS7A01G170600.1	Wheat	nucleus	38.7	50.44
TraesCS7D01G171300.1	Wheat	nucleus	38.93	50.43
Zm00001d044940_P002	Maize	nucleus	39.6	50.43
KXG19586	Sorghum	nucleus	39.15	50.29
EER96850	Sorghum	nucleus	41.16	50.27
Os09t0456200-01	Rice	nucleus	40.94	48.67
TraesCS5A01G237200.2	Wheat	nucleus	39.6	48.1
TraesCS5B01G235600.2	Wheat	nucleus	39.15	47.81
TraesCS5D01G244500.1	Wheat	nucleus	39.15	47.81
HORVU5Hr1G068230.1	Barley	nucleus	39.15	47.68
Zm00001d031790_P002	Maize	nucleus	37.36	46.78
Zm00001d050018_P007	Maize	nucleus	38.93	44.5
KXG26981	Sorghum	nucleus	16.33	44.24
VIT_06s0009g01790.t01	Wine grape	nucleus	24.16	43.55
VIT_13s0175g00120.t01	Wine grape	nucleus	30.87	42.46
Zm00001d020711_P001	Maize	nucleus	37.81	41.73
CDX71528	Canola	nucleus	32.89	37.6
VIT_08s0007g03420.t01	Wine grape	nucleus	33.56	37.5
VIT_06s0080g00340.t01	Wine grape	nucleus	27.07	37.35
CDY22378	Canola	nucleus	32.66	36.96
VIT_12s0034g00110.t01	Wine grape	nucleus	8.05	36.36
AT5G42910.1	Thale cress	nucleus	29.98	36.22
Zm00001d005884_P002	Maize	nucleus	24.61	36.07
Bra033649.1-P	Field mustard	nucleus	32.44	35.02
VIT_12s0055g00420.t01	Wine grape	nucleus	22.82	34.11
VIT_18s0001g04500.t01	Wine grape	nucleus	23.04	33.12
VIT_18s0072g00470.t01	Wine grape	nucleus, plastid	19.69	32.0

Protein Annotations

Gene3D:1.20.5.170	EntrezGene:100232889	wikigene:100232889	MapMan:15.5.4.1	EMBL:AJ237992	ProteinID:CAB85632
ProteinID:CAB85632.1	ProteinID:CCB45840	ProteinID:CCB45840.1	ncoils:Coil	EMBL:FN595227	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0006139	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EntrezGene:GRIP55	wikigene:GRIP55
InterPro:IPR004827	RefSeq:NP_001268150.1	PFAM:PF00170	ScanProsite:PS00036	PFscan:PS50217	PANTHER:PTHR22952
PANTHER:PTHR22952:SF368	UniProt:Q9M4H1	SMART:SM00338	SUPFAM:SSF57959	TIGR:TC52653	UniParc:UPI000009FB1C
ArrayExpress:VIT_18s0001g10450	EnsemblPlantsGene:VIT_18s0001g10450	EnsemblPlants:VIT_18s0001g10450.t01	unigene:Vvi.86	RefSeq:XP_010664064.1	InterPro:bZIP
SEG:seg	:	:	:	:	:

Description

Putative ripening-related bZIP protein [Source:UniProtKB/TrEMBL;Acc:Q9M4H1]

Coordinates

chr18:-:8761978..8769742

Molecular Weight (calculated)

47882.0 Da

IEP (calculated)

9.935

GRAVY (calculated)

-0.580

Length

447 amino acids

Sequence
(BLAST)

001: MGSNLNFKNF GGSQQGDGSG RPPGNMPLVR QGSIYSLTFD EFQSTMGGIG KDFGSMNMDE LLKNIWSAEE AQTMAAVAAA TAPPISVQEG VVAGGYLQRQ
101: GSLTLPRTLS QKTVDEVWKD MSKEYGGGAK DGSGAGGSNL PQRQPTLGEM TLEEFLVRAG VVREDTQLAG KPNNGGFFGD LANLGNGNGL GIAFQQMGQN
201: TGLMGNPRIT ESNNQISTQS PILPLNVNGV RSTQQQPQQL QQLQQLQQRS SQQQLFPKQA PVTYTTPVSV QSNSQLCNPG IRNGMVGISD SGINGNLVQS
301: SVLHGGGMGM VGLGAGGATI ASGSPANQSS DGIGKSNGDT SSVSPVPYAF NGGIRGRKCS GAVEKVIERR QRRMIKNRES AARSRARKQA YTMELEAEVA
401: KLKEKNEELE KKQAEMMEMQ KNQVMEMMNL QREVKKRCLR RTLTGPW

Best Arabidopsis Sequence Match ( AT1G45249.1 )
(BLAST)

001: MDGSMNLGNE PPGDGGGGGG LTRQGSIYSL TFDEFQSSVG KDFGSMNMDE LLKNIWSAEE TQAMASGVVP VLGGGQEGLQ LQRQGSLTLP RTLSQKTVDQ
101: VWKDLSKVGS SGVGGSNLSQ VAQAQSQSQS QRQQTLGEVT LEEFLVRAGV VREEAQVAAR AQIAENNKGG YFGNDANTGF SVEFQQPSPR VVAAGVMGNL
201: GAETANSLQV QGSSLPLNVN GARTTYQQSQ QQQPIMPKQP GFGYGTQMGQ LNSPGIRGGG LVGLGDQSLT NNVGFVQGAS AAIPGALGVG AVSPVTPLSS
301: EGIGKSNGDS SSLSPSPYMF NGGVRGRKSG TVEKVVERRQ RRMIKNRESA ARSRARKQAY TVELEAEVAK LKEENDELQR KQARIMEMQK NQETEMRNLL
401: QGGPKKKLRR TESGPW

Arabidopsis Description

ABF2abscisic acid responsive elements-binding factor 2 [Source:TAIR;Acc:AT1G45249]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.