Factsheet for GSMUA_Achr9P27130_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
endoplasmic reticulum 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P30550_001	Banana	nucleus	62.78	63.57
GSMUA_Achr5P24570_001	Banana	nucleus	58.31	60.57
CDY65560	Canola	nucleus	44.66	59.6
GSMUA_Achr6P04270_001	Banana	nucleus	54.09	56.92
GSMUA_Achr5P05690_001	Banana	nucleus	55.09	54.55
CDY17109	Canola	nucleus	44.91	54.03
Bra040260.1-P	Field mustard	nucleus	47.89	53.02
KRH52002	Soybean	cytosol	12.66	52.04
EES07580	Sorghum	nucleus	44.66	52.02
VIT_03s0063g00310.t01	Wine grape	nucleus	52.36	51.59
Os02t0766700-01	Rice	nucleus	45.41	51.26
Os06t0211200-01	Rice	nucleus	40.94	50.93
CDY28083	Canola	nucleus	29.78	50.63
Zm00001d037170_P001	Maize	nucleus	42.18	50.3
Zm00001d018178_P001	Maize	nucleus	43.67	50.14
Os08t0472000-01	Rice	nucleus	39.45	50.0
GSMUA_Achr3P07000_001	Banana	nucleus	49.88	49.88
CDX99242	Canola	nucleus	43.42	49.44
CDY18575	Canola	nucleus	43.18	49.43
KRH50289	Soybean	nucleus	51.86	49.29
KRH61298	Soybean	nucleus	50.87	49.16
KXG19586	Sorghum	nucleus	42.43	49.14
VIT_18s0001g10450.t01	Wine grape	nucleus	54.34	48.99
Bra022409.1-P	Field mustard	nucleus	42.93	48.87
CDX92320	Canola	nucleus	42.93	48.73
Zm00001d044940_P002	Maize	nucleus	42.43	48.72
HORVU7Hr1G035500.2	Barley	nucleus	40.2	48.65
CDX69020	Canola	nucleus	42.18	48.57
KRH71134	Soybean	nucleus	52.85	48.52
HORVU6Hr1G080670.1	Barley	nucleus	42.93	48.46
TraesCS6B01G364000.1	Wheat	nucleus	42.18	48.43
CDY68227	Canola	nucleus	41.94	48.42
OQU80633	Sorghum	nucleus	45.66	48.17
TraesCS5A01G237200.2	Wheat	nucleus	43.92	48.1
EER96850	Sorghum	nucleus	43.67	48.09
OQU78764	Sorghum	nucleus	37.22	48.08
TraesCS6A01G333600.2	Wheat	nucleus	41.69	48.0
TraesCS7B01G075600.1	Wheat	nucleus	39.95	47.35
AT1G45249.6	Thale cress	nucleus	50.62	47.33
TraesCS5D01G244500.1	Wheat	nucleus	42.93	47.27
TraesCS5B01G235600.2	Wheat	nucleus	42.93	47.27
HORVU5Hr1G068230.1	Barley	nucleus	42.93	47.14
PGSC0003DMT400059040	Potato	nucleus	42.68	46.99
Solyc04g078840.2.1	Tomato	nucleus	52.11	46.98
CDY51041	Canola	nucleus	38.46	46.97
TraesCS7D01G171300.1	Wheat	nucleus	40.2	46.96
TraesCS6D01G312800.1	Wheat	nucleus	41.94	46.94
TraesCS7A01G170600.1	Wheat	nucleus	39.95	46.94
CDY63041	Canola	nucleus	41.19	46.89
Os09t0456200-01	Rice	nucleus	43.67	46.81
Bra001742.1-P	Field mustard	nucleus	41.19	46.76
CDX82302	Canola	nucleus	42.18	46.7
PGSC0003DMT400020670	Potato	nucleus	51.61	45.92
Bra037533.1-P	Field mustard	nucleus	44.17	45.88
CDY58256	Canola	nucleus	44.42	45.78
Solyc01g108080.2.1	Tomato	nucleus	46.9	45.65
Solyc10g050210.1.1	Tomato	nucleus	42.93	44.59
PGSC0003DMT400066603	Potato	nucleus	45.41	44.2
CDX72445	Canola	nucleus	44.66	43.9
Bra018800.1-P	Field mustard	nucleus	39.7	43.48
PGSC0003DMT400015892	Potato	nucleus	44.66	43.48
KRH52003	Soybean	nucleus	35.48	43.47
Zm00001d031790_P002	Maize	nucleus	37.97	42.86
AT3G19290.3	Thale cress	nucleus	45.91	42.82
Solyc11g044560.1.1	Tomato	nucleus	42.18	42.61
AT4G34000.2	Thale cress	nucleus	46.9	41.63
Zm00001d020711_P001	Maize	nucleus	40.94	40.74
KXG26981	Sorghum	nucleus	16.63	40.61
Zm00001d050018_P007	Maize	nucleus	38.96	40.15
GSMUA_Achr8P21560_001	Banana	nucleus	23.33	39.5
Bra011485.1-P	Field mustard	nucleus	42.68	39.18
AT1G49720.2	Thale cress	nucleus	38.96	38.96
GSMUA_Achr11P...	Banana	nucleus	23.33	38.68
GSMUA_AchrUn_...	Banana	nucleus	25.31	37.23
GSMUA_Achr10P...	Banana	mitochondrion, nucleus	18.61	37.13
GSMUA_Achr8P07740_001	Banana	nucleus	31.27	36.31
GSMUA_Achr3P22710_001	Banana	nucleus	31.27	35.9
Zm00001d005884_P002	Maize	nucleus	27.05	35.74
GSMUA_Achr6P15970_001	Banana	nucleus	17.12	35.57
GSMUA_Achr2P20490_001	Banana	nucleus	21.09	34.98
Bra017621.1-P	Field mustard	cytosol	25.81	34.9
GSMUA_Achr2P07520_001	Banana	nucleus	18.36	33.95
GSMUA_Achr10P...	Banana	nucleus	19.11	32.91
AT5G42910.1	Thale cress	nucleus	29.28	31.89
CDY22378	Canola	nucleus	31.02	31.65
CDX71528	Canola	nucleus	30.02	30.95
GSMUA_Achr3P22470_001	Banana	nucleus	19.6	30.86
GSMUA_Achr9P08900_001	Banana	nucleus	18.36	29.84
Bra033649.1-P	Field mustard	nucleus	30.52	29.71
GSMUA_Achr10P...	Banana	nucleus	18.36	27.72

Protein Annotations

Gene3D:1.20.5.170	MapMan:15.5.4.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003700	GO:GO:0006139
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSMUA_Achr9G27130_001
EnsemblPlants:GSMUA_Achr9P27130_001	EnsemblPlants:GSMUA_Achr9T27130_001	InterPro:IPR004827	UniProt:M0U3X0	PFAM:PF00170	ScanProsite:PS00036
PFscan:PS50217	PANTHER:PTHR22952	PANTHER:PTHR22952:SF158	SMART:SM00338	SUPFAM:SSF57959	UniParc:UPI000294D7D0
InterPro:bZIP	SEG:seg	:	:	:	:

Description

Putative bZIP transcription factor TRAB1 [Source:GMGC_GENE;Acc:GSMUA_Achr9G27130_001]

Coordinates

chr9:-:31386467..31392766

Molecular Weight (calculated)

43387.9 Da

IEP (calculated)

10.663

GRAVY (calculated)

-0.554

Length

403 amino acids

Sequence
(BLAST)

001: MNSKSLGVGR EDGQAQPPPP PTLLSRQGSI YSLTFDEFQS TRGGLGKDFG SMNMDEFLKN IWTAEESYAM VAALGDGSGG FGAGAGLQRQ ASLTLPRTLS
101: QKTVDQVWRG LVEPSSSGQG VAASCGGTDF PRQPTLGEIT LEEFLVRAGV VREDMAPSPR PPTPIGNKSN NTNIYYGDLP VVNTSAGLEL KFNQAPGRSN
201: GNMANVPIAH GSAANLGVTS TVARPFAPPV PLGDSMGLVS PQGMRGGELG GFGHVGMNNR LMTGMVGLST AGVMGASGSP KNHLSSDEIV KGNGDLSSLS
301: PVPYVFNGGP RERKRNRSLD KVVERRQRRM IKNRESAARS RARKQAYTVE LEAEVAKLKE LNQELQKKQV EMMEMKKNQV LQVIKRQHGQ KKQRLRRTRT
401: GPW

Best Arabidopsis Sequence Match ( AT1G45249.1 )
(BLAST)

001: MDGSMNLGNE PPGDGGGGGG LTRQGSIYSL TFDEFQSSVG KDFGSMNMDE LLKNIWSAEE TQAMASGVVP VLGGGQEGLQ LQRQGSLTLP RTLSQKTVDQ
101: VWKDLSKVGS SGVGGSNLSQ VAQAQSQSQS QRQQTLGEVT LEEFLVRAGV VREEAQVAAR AQIAENNKGG YFGNDANTGF SVEFQQPSPR VVAAGVMGNL
201: GAETANSLQV QGSSLPLNVN GARTTYQQSQ QQQPIMPKQP GFGYGTQMGQ LNSPGIRGGG LVGLGDQSLT NNVGFVQGAS AAIPGALGVG AVSPVTPLSS
301: EGIGKSNGDS SSLSPSPYMF NGGVRGRKSG TVEKVVERRQ RRMIKNRESA ARSRARKQAY TVELEAEVAK LKEENDELQR KQARIMEMQK NQETEMRNLL
401: QGGPKKKLRR TESGPW

Arabidopsis Description

ABF2abscisic acid responsive elements-binding factor 2 [Source:TAIR;Acc:AT1G45249]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.