Factsheet for Bra018800.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
endoplasmic reticulum 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY51041	Canola	nucleus	88.86	99.09
CDY28083	Canola	nucleus	60.33	93.67
AT1G49720.2	Thale cress	nucleus	73.91	67.49
Bra001742.1-P	Field mustard	nucleus	60.6	62.82
Bra037533.1-P	Field mustard	nucleus	65.76	62.37
Bra022409.1-P	Field mustard	nucleus	57.61	59.89
Os06t0211200-01	Rice	nucleus	41.3	46.91
TraesCS6B01G364000.1	Wheat	nucleus	43.48	45.58
TraesCS6A01G333600.2	Wheat	nucleus	43.21	45.43
PGSC0003DMT400059040	Potato	nucleus	45.11	45.36
HORVU6Hr1G080670.1	Barley	nucleus	43.21	44.54
VIT_03s0063g00310.t01	Wine grape	nucleus	49.46	44.5
HORVU7Hr1G035500.2	Barley	nucleus	40.22	44.44
EES07580	Sorghum	nucleus	41.58	44.22
TraesCS6D01G312800.1	Wheat	nucleus	43.21	44.17
Os02t0766700-01	Rice	nucleus	42.39	43.7
Bra040260.1-P	Field mustard	nucleus	43.21	43.68
KRH50289	Soybean	nucleus	50.27	43.63
TraesCS7B01G075600.1	Wheat	nucleus	40.22	43.53
Zm00001d037170_P001	Maize	nucleus	39.95	43.49
Zm00001d018178_P001	Maize	nucleus	41.3	43.3
EER96850	Sorghum	nucleus	42.93	43.17
TraesCS7A01G170600.1	Wheat	nucleus	40.22	43.15
Solyc01g108080.2.1	Tomato	nucleus	48.37	43.0
GSMUA_Achr6P30550_001	Banana	nucleus	46.47	42.96
TraesCS5A01G237200.2	Wheat	nucleus	42.93	42.93
TraesCS7D01G171300.1	Wheat	nucleus	40.22	42.9
Bra014668.1-P	Field mustard	nucleus	26.63	42.79
PGSC0003DMT400066603	Potato	nucleus	47.83	42.51
Os08t0472000-01	Rice	nucleus	36.68	42.45
TraesCS5B01G235600.2	Wheat	nucleus	42.12	42.35
TraesCS5D01G244500.1	Wheat	nucleus	42.12	42.35
HORVU5Hr1G068230.1	Barley	nucleus	41.85	41.96
KXG19586	Sorghum	nucleus	39.67	41.95
KRH71134	Soybean	nucleus	50.0	41.91
OQU80633	Sorghum	nucleus	43.48	41.88
Zm00001d044940_P002	Maize	nucleus	39.95	41.88
Os09t0456200-01	Rice	nucleus	42.66	41.76
GSMUA_Achr6P04270_001	Banana	nucleus	42.93	41.25
Bra007274.1-P	Field mustard	nucleus	31.52	41.13
Bra007276.1-P	Field mustard	nucleus	31.52	41.13
Solyc11g044560.1.1	Tomato	nucleus	44.57	41.1
Solyc10g050210.1.1	Tomato	nucleus	42.66	40.46
GSMUA_Achr5P24570_001	Banana	nucleus	42.39	40.21
PGSC0003DMT400015892	Potato	nucleus	45.11	40.1
OQU78764	Sorghum	nucleus	33.97	40.06
GSMUA_Achr9P27130_001	Banana	nucleus	43.48	39.7
GSMUA_Achr5P05690_001	Banana	nucleus	43.75	39.56
Bra016953.1-P	Field mustard	nucleus	28.53	39.33
Bra004597.1-P	Field mustard	nucleus	28.53	37.37
GSMUA_Achr3P07000_001	Banana	nucleus	39.95	36.48
Bra011485.1-P	Field mustard	nucleus	43.48	36.45
Zm00001d031790_P002	Maize	nucleus	35.33	36.41
Zm00001d020711_P001	Maize	nucleus	39.4	35.8
Zm00001d050018_P007	Maize	nucleus	37.77	35.55
KXG26981	Sorghum	nucleus	14.95	33.33
Bra017621.1-P	Field mustard	cytosol	26.09	32.21
Zm00001d005884_P002	Maize	nucleus	26.36	31.8
Bra017251.1-P	Field mustard	nucleus	33.42	31.06
Bra019436.1-P	Field mustard	nucleus	27.99	30.65
Bra005287.1-P	Field mustard	nucleus	33.15	27.85
Bra033649.1-P	Field mustard	nucleus	30.98	27.54
Bra003253.1-P	Field mustard	plastid	29.89	27.3
Bra015281.1-P	Field mustard	nucleus, plastid	16.85	23.13
Bra033719.1-P	Field mustard	nucleus, plastid	16.58	22.93

Protein Annotations

Gene3D:1.20.5.170	MapMan:15.5.4.1	EnsemblPlantsGene:Bra018800	EnsemblPlants:Bra018800.1	EnsemblPlants:Bra018800.1-P	ncoils:Coil
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0006139
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009719	GO:GO:0009737
GO:GO:0009987	GO:GO:0043565	GO:GO:0044212	InterPro:IPR004827	UniProt:M4DQK7	PFAM:PF00170
ScanProsite:PS00036	PFscan:PS50217	PANTHER:PTHR22952	PANTHER:PTHR22952:SF158	SMART:SM00338	SUPFAM:SSF57959
UniParc:UPI000253EBD4	InterPro:bZIP	SEG:seg	:	:	:

Description

AT1G49720 (E=4e-065) ABF1 | ABF1 (ABSCISIC ACID RESPONSIVE ELEMENT-BINDING FACTOR 1); DNA binding / protein binding / transcription activator/ transcription factor

Coordinates

chrA06:+:1889357..1890730

Molecular Weight (calculated)

40302.2 Da

IEP (calculated)

9.794

GRAVY (calculated)

-0.777

Length

368 amino acids

Sequence
(BLAST)

001: MGTHINFNSL DVDSSGGNGS DNSQSKPLGR QSSLYSLTFD ELQSTLGEPG KEFGSMNMDE LLKNIWTAEE TTQPIMTTTS SVASVQQPSS GFAPGGGSLV
101: QRQGSLTLPR TLSQKTVDEV WKHLMSKDSS NGSDAPERQE TLGEMTLEDF LLRAGVVKED SQQNQNNCVS TGLGFGFGQP NQNNISSKGN NSSMILNQAP
201: ATMQQQQQLQ PPHQRLPPTI YPKQANVTFA APVNNNNSGF AAMGRGGVTV ASTSPSAENN AAWSSPVPYV FGGQGRRSNT GVVEKVVERR QKRMIKNRES
301: AARSRARKQA YTLELEAEIE NLKQLNQDLQ RKQAEIMKTQ KNELKEPAKQ RPWLAKTQCL RRTLTGPW

Best Arabidopsis Sequence Match ( AT1G49720.1 )
(BLAST)

001: MGTHIDINNL GGDTSRGNES KPLARQSSLY SLTFDELQST LGEPGKDFGS MNMDELLKNI WTAEDTQAFM TTTSSVAAPG PSGFVPGGNG LQRQGSLTLP
101: RTLSQKTVDE VWKYLNSKEG SNGNTGTDAL ERQQTLGEMT LEDFLLRAGV VKEDNTQQNE NSSSGFYANN GAAGLEFGFG QPNQNSISFN GNNSSMIMNQ
201: APGLGLKVGG TMQQQQQPHQ QQLQQPHQRL PPTIFPKQAN VTFAAPVNMV NRGLFETSAD GPANSNMGGA GGTVTATSPG TSSAENNTWS SPVPYVFGRG
301: RRSNTGLEKV VERRQKRMIK NRESAARSRA RKQAYTLELE AEIESLKLVN QDLQKKQAEI MKTHNSELKE FSKQPPLLAK RQCLRRTLTG PW

Arabidopsis Description

ABF1Abscisic acid responsive element-binding factor 1 [Source:UniProtKB/TrEMBL;Acc:F4I3C9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.