Factsheet for Bra001742.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX82302	Canola	nucleus	93.8	91.48
Bra037533.1-P	Field mustard	nucleus	80.56	73.71
Bra022409.1-P	Field mustard	nucleus	71.55	71.75
AT3G19290.3	Thale cress	nucleus	82.25	67.59
Bra018800.1-P	Field mustard	nucleus	62.82	60.6
VIT_03s0063g00310.t01	Wine grape	nucleus	53.52	46.45
Os06t0211200-01	Rice	nucleus	41.97	45.99
Bra040260.1-P	Field mustard	nucleus	46.76	45.6
EES07580	Sorghum	nucleus	44.23	45.38
TraesCS6B01G364000.1	Wheat	nucleus	44.79	45.3
TraesCS6A01G333600.2	Wheat	nucleus	44.51	45.14
PGSC0003DMT400059040	Potato	nucleus	46.48	45.08
Zm00001d037170_P001	Maize	nucleus	42.82	44.97
Os08t0472000-01	Rice	nucleus	40.28	44.97
Os02t0766700-01	Rice	nucleus	45.07	44.82
HORVU7Hr1G035500.2	Barley	nucleus	41.97	44.74
Zm00001d018178_P001	Maize	nucleus	44.23	44.73
HORVU6Hr1G080670.1	Barley	nucleus	44.79	44.54
EER96850	Sorghum	nucleus	45.92	44.54
Solyc01g108080.2.1	Tomato	nucleus	51.27	43.96
TraesCS6D01G312800.1	Wheat	nucleus	44.51	43.89
TraesCS7B01G075600.1	Wheat	nucleus	41.97	43.82
PGSC0003DMT400066603	Potato	nucleus	50.99	43.72
GSMUA_Achr6P30550_001	Banana	nucleus	48.73	43.47
KRH50289	Soybean	nucleus	51.83	43.4
Zm00001d044940_P002	Maize	nucleus	42.82	43.3
OQU80633	Sorghum	nucleus	46.48	43.19
TraesCS7D01G171300.1	Wheat	nucleus	41.97	43.19
TraesCS7A01G170600.1	Wheat	nucleus	41.69	43.15
KXG19586	Sorghum	nucleus	42.25	43.1
GSMUA_Achr6P04270_001	Banana	nucleus	46.48	43.08
TraesCS5A01G237200.2	Wheat	nucleus	44.51	42.93
TraesCS5D01G244500.1	Wheat	nucleus	43.94	42.62
Os09t0456200-01	Rice	nucleus	45.07	42.55
TraesCS5B01G235600.2	Wheat	nucleus	43.66	42.35
OQU78764	Sorghum	nucleus	37.18	42.31
GSMUA_Achr5P24570_001	Banana	nucleus	46.2	42.27
KRH71134	Soybean	nucleus	51.83	41.91
HORVU5Hr1G068230.1	Barley	nucleus	43.1	41.69
GSMUA_Achr9P27130_001	Banana	nucleus	46.76	41.19
PGSC0003DMT400015892	Potato	nucleus	47.61	40.82
Solyc11g044560.1.1	Tomato	nucleus	45.63	40.6
GSMUA_Achr5P05690_001	Banana	nucleus	46.48	40.54
Solyc10g050210.1.1	Tomato	nucleus	42.82	39.18
Bra011485.1-P	Field mustard	nucleus	47.61	38.5
GSMUA_Achr3P07000_001	Banana	nucleus	43.1	37.97
Zm00001d031790_P002	Maize	nucleus	36.9	36.69
Bra014668.1-P	Field mustard	nucleus	23.66	36.68
KXG26981	Sorghum	nucleus	16.9	36.36
Zm00001d050018_P007	Maize	nucleus	40.0	36.32
Zm00001d020711_P001	Maize	nucleus	41.41	36.3
Bra007276.1-P	Field mustard	nucleus	28.73	36.17
Bra007274.1-P	Field mustard	nucleus	28.73	36.17
Bra016953.1-P	Field mustard	nucleus	26.76	35.58
Bra017621.1-P	Field mustard	cytosol	28.73	34.23
Bra004597.1-P	Field mustard	nucleus	26.48	33.45
Zm00001d005884_P002	Maize	nucleus	26.76	31.15
Bra017251.1-P	Field mustard	nucleus	33.52	30.05
Bra019436.1-P	Field mustard	nucleus	27.32	28.87
Bra005287.1-P	Field mustard	nucleus	34.65	28.08
Bra033649.1-P	Field mustard	nucleus	31.83	27.29
Bra003253.1-P	Field mustard	plastid	27.61	24.32
Bra015281.1-P	Field mustard	nucleus, plastid	16.9	22.39
Bra033719.1-P	Field mustard	nucleus, plastid	15.77	21.05

Protein Annotations

Gene3D:1.20.5.170	MapMan:15.5.4.1	EnsemblPlantsGene:Bra001742	EnsemblPlants:Bra001742.1	EnsemblPlants:Bra001742.1-P	ncoils:Coil
GO:GO:0003674	GO:GO:0003700	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	InterPro:IPR004827	UniProt:M4CC12	PFAM:PF00170	ScanProsite:PS00036
PFscan:PS50217	PANTHER:PTHR22952	PANTHER:PTHR22952:SF158	SMART:SM00338	SUPFAM:SSF57959	UniParc:UPI00025404F1
InterPro:bZIP	SEG:seg	:	:	:	:

Description

AT1G49720 (E=2e-100) ABF1 | ABF1 (ABSCISIC ACID RESPONSIVE ELEMENT-BINDING FACTOR 1); DNA binding / protein binding / transcription activator/ transcription factor

Coordinates

chrA03:+:18205664..18207116

Molecular Weight (calculated)

39299.1 Da

IEP (calculated)

9.846

GRAVY (calculated)

-0.849

Length

355 amino acids

Sequence
(BLAST)

001: MGTHINFNSL GGGGSYQMKP TDSPNPLARQ SSVYSLTFDE LQSTFGGPGK DLGSMNMDEL LKSIWTAEEA QAMTSSAATA VAQHGGGNLQ RQGSLTLPRT
101: INQKTVDEVW KFLITKDGEM GGSSNGESNA QQTLGEMKIE DFLFRAGVVR EDNNEFYGNN GAAEGLGFGF GQLNQNNISF NGTNDSMILN QPQQQSHPQQ
201: QHQHQRLPQT IFPKQGNVEF TAHVGMVNNY NGLGSFRGEG VKIGATSPGT SSGENNSFSP VPYVLNRGRR SHTGVEKVIE RRQRRKIKNR ESAARSRARK
301: QAYTLELEAE IEKLKKVNQE LQRKQAEMME MQKNEVNEPR GSKRQCLRRT LTGPW

Best Arabidopsis Sequence Match ( AT3G19290.5 )
(BLAST)

001: MGTHINFNNL GGGGHPGGEG SSNQMKPTGS VMPLARQSSV YSLTFDELQN TLGGPGKDFG SMNMDELLKS IWTAEEAQAM AMTSAPAATA VAQPGAGIPP
101: PGGNLQRQGS LTLPRTISQK TVDEVWKCLI TKDGNMEGSS GGGGESNVPP GRQQTLGEMT LEEFLFRAGV VREDNCVQQM GQVNGNNNNG FYGNSTAAGG
201: LGFGFGQPNQ NSITFNGTND SMILNQPPGL GLKMGGTMQQ QQQQQQLLQQ QQQQMQQLNQ PHPQQRLPQT IFPKQANVAF SAPVNITNKG FAGAANNSIN
301: NNNGLASYGG TGVTVAATSP GTSSAENNSL SPVPYVLNRG RRSNTGLEKV IERRQRRMIK NRESAARSRA RKQAYTLELE AEIEKLKKTN QELQKKQAEM
401: VEMQKNELKE TSKRPWGSKR QCLRRTLTGP W

Arabidopsis Description

ABF4ABRE binding factor 4 [Source:UniProtKB/TrEMBL;Acc:F4JB53]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.