Factsheet for Solyc10g050210.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
endoplasmic reticulum 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400015892	Potato	nucleus	88.66	83.09
Solyc01g108080.2.1	Tomato	nucleus	61.34	57.49
Solyc11g044560.1.1	Tomato	nucleus	56.19	54.64
VIT_03s0063g00310.t01	Wine grape	nucleus	51.8	49.14
CDY28083	Canola	nucleus	29.9	48.95
Os06t0211200-01	Rice	nucleus	39.18	46.91
CDY68227	Canola	nucleus	40.98	45.56
KRH50289	Soybean	nucleus	49.74	45.52
CDY51041	Canola	nucleus	38.66	45.45
HORVU7Hr1G035500.2	Barley	nucleus	38.92	45.35
Zm00001d037170_P001	Maize	nucleus	39.18	44.97
KXG19586	Sorghum	nucleus	40.21	44.83
TraesCS7B01G075600.1	Wheat	nucleus	39.18	44.71
CDX99242	Canola	nucleus	40.72	44.63
GSMUA_Achr6P30550_001	Banana	nucleus	45.62	44.47
TraesCS6B01G364000.1	Wheat	nucleus	40.21	44.44
Zm00001d044940_P002	Maize	nucleus	40.21	44.44
GSMUA_Achr5P24570_001	Banana	nucleus	44.33	44.33
TraesCS6A01G333600.2	Wheat	nucleus	39.95	44.29
CDX69020	Canola	nucleus	39.95	44.29
Solyc04g078840.2.1	Tomato	nucleus	50.77	44.07
Os08t0472000-01	Rice	nucleus	36.08	44.03
EES07580	Sorghum	nucleus	39.18	43.93
TraesCS7D01G171300.1	Wheat	nucleus	38.92	43.77
TraesCS7A01G170600.1	Wheat	nucleus	38.66	43.73
Os02t0766700-01	Rice	nucleus	40.21	43.7
CDY63041	Canola	nucleus	39.69	43.5
CDY18575	Canola	nucleus	39.43	43.47
HORVU6Hr1G080670.1	Barley	nucleus	39.95	43.42
KRH71134	Soybean	nucleus	48.97	43.28
TraesCS6D01G312800.1	Wheat	nucleus	39.95	43.06
Bra022409.1-P	Field mustard	nucleus	39.18	42.94
GSMUA_Achr9P27130_001	Banana	nucleus	44.59	42.93
CDX92320	Canola	nucleus	39.18	42.82
Bra001742.1-P	Field mustard	nucleus	39.18	42.82
GSMUA_Achr5P05690_001	Banana	nucleus	44.85	42.75
Bra018800.1-P	Field mustard	nucleus	40.46	42.66
Zm00001d018178_P001	Maize	nucleus	38.4	42.45
CDX82302	Canola	nucleus	39.69	42.31
OQU80633	Sorghum	nucleus	41.49	42.15
OQU78764	Sorghum	nucleus	33.76	41.99
Bra037533.1-P	Field mustard	nucleus	41.75	41.75
CDX72445	Canola	nucleus	43.3	40.98
CDY58256	Canola	nucleus	41.24	40.92
GSMUA_Achr6P04270_001	Banana	nucleus	40.21	40.73
GSMUA_Achr3P07000_001	Banana	nucleus	41.75	40.2
EER96850	Sorghum	nucleus	37.89	40.16
Os09t0456200-01	Rice	nucleus	38.66	39.89
AT3G19290.3	Thale cress	nucleus	44.33	39.81
HORVU5Hr1G068230.1	Barley	nucleus	37.63	39.78
TraesCS5A01G237200.2	Wheat	nucleus	37.63	39.67
TraesCS5D01G244500.1	Wheat	nucleus	36.86	39.07
TraesCS5B01G235600.2	Wheat	nucleus	36.6	38.8
AT4G34000.2	Thale cress	nucleus	44.59	38.11
Solyc01g008980.2.1	Tomato	nucleus	13.92	36.99
KXG26981	Sorghum	nucleus	15.72	36.97
AT1G49720.2	Thale cress	nucleus	38.14	36.72
Bra011485.1-P	Field mustard	nucleus	41.24	36.45
Zm00001d031790_P002	Maize	nucleus	33.25	36.13
Zm00001d050018_P007	Maize	nucleus	36.34	36.06
Zm00001d020711_P001	Maize	nucleus	35.05	33.58
Solyc10g081350.1.1	Tomato	nucleus	28.61	31.71
Zm00001d005884_P002	Maize	nucleus	23.2	29.51
Solyc09g009490.2.1	Tomato	nucleus	32.22	29.34
Bra017621.1-P	Field mustard	cytosol	22.42	29.19
Solyc10g076920.1.1	Tomato	nucleus	20.1	27.56
Solyc04g071510.2.1	Tomato	nucleus, plastid	21.39	26.95
Solyc01g104650.2.1	Tomato	nucleus	19.07	24.92
Solyc01g009510.1.1	Tomato	nucleus	11.34	23.16

Protein Annotations

Gene3D:1.20.5.170	MapMan:15.5.4.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003700	GO:GO:0006139
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR004827
UniProt:K4D0H7	PFAM:PF00170	ScanProsite:PS00036	PFscan:PS50217	PANTHER:PTHR22952	PANTHER:PTHR22952:SF158
SMART:SM00338	SUPFAM:SSF57959	EnsemblPlantsGene:Solyc10g050210.1	EnsemblPlants:Solyc10g050210.1.1	UniParc:UPI000276A3A7	InterPro:bZIP
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr10:-:48120102..48122095

Molecular Weight (calculated)

42419.4 Da

IEP (calculated)

10.518

GRAVY (calculated)

-0.559

Length

388 amino acids

Sequence
(BLAST)

001: MGSGSFSLTR QSSMYSLTFE ELQSTCGFRK DVGSMNLEDL LKNISTAEES RGLASSAGVG EGSMAAGTLQ RQGSLTLPRT LNQRTVDEVW RDFQNETTVS
101: SNLGQKQSNL GEMTLEEFLV RAGVVRDDNQ PNVTSNNVGF TGVLGEPSSN NNALNIAFQQ PTQSPGLLSK FSESNMLNVV NVKSSQQQPQ QQQPLIPKKR
201: NVDFASTMQL GNNCQLASPR ARAVVVSTSS RSVHATVVQG GVMQNGVKGM AGLLSGVTFA PGGSPGNQLS SEMISKDKLY RSFLSPSPYA FNEGGRGRKS
301: CSTLEKVVER RHKRMIKNRE SAARSRARKQ AYTFALEAEV AKLKEINEKL QKKQAEFIDS QKNQLLEKMN TSFGSKLRCL RRTLTGPW

Best Arabidopsis Sequence Match ( AT4G34000.2 )
(BLAST)

001: MGSRLNFKSF VDGVSEQQPT VGTSLPLTRQ NSVFSLTFDE FQNSWGGGIG KDFGSMNMDE LLKNIWTAEE SHSMMGNNTS YTNISNGNSG NTVINGGGNN
101: IGGLAVGVGG ESGGFFTGGS LQRQGSLTLP RTISQKRVDD VWKELMKEDD IGNGVVNGGT SGIPQRQQTL GEMTLEEFLV RAGVVREEPQ PVESVTNFNG
201: GFYGFGSNGG LGTASNGFVA NQPQDLSGNG VAVRQDLLTA QTQPLQMQQP QMVQQPQMVQ QPQQLIQTQE RPFPKQTTIA FSNTVDVVNR SQPATQCQEV
301: KPSILGIHNH PMNNNLLQAV DFKTGVTVAA VSPGSQMSPD LTPKSALDAS LSPVPYMFGR VRKTGAVLEK VIERRQKRMI KNRESAARSR ARKQAYTMEL
401: EAEIAQLKEL NEELQKKQVE IMEKQKNQLL EPLRQPWGMG CKRQCLRRTL TGPW

Arabidopsis Description

ABF3ABSCISIC ACID-INSENSITIVE 5-like protein 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9M7Q3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.