Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY51041 | Canola | nucleus | 89.87 | 64.55 |
| Bra018800.1-P | Field mustard | nucleus | 93.67 | 60.33 |
| CDY63041 | Canola | nucleus | 72.57 | 48.59 |
| AT1G49720.2 | Thale cress | nucleus | 78.06 | 45.91 |
| CDY18575 | Canola | nucleus | 65.4 | 44.03 |
| CDX82302 | Canola | nucleus | 65.82 | 42.86 |
| CDY58256 | Canola | nucleus | 70.46 | 42.71 |
| CDX99242 | Canola | nucleus | 63.29 | 42.37 |
| CDX92320 | Canola | nucleus | 61.6 | 41.13 |
| CDY65560 | Canola | nucleus | 50.63 | 39.74 |
| Os08t0472000-01 | Rice | nucleus | 51.9 | 38.68 |
| Os06t0211200-01 | Rice | nucleus | 50.63 | 37.04 |
| CDY68227 | Canola | nucleus | 54.43 | 36.96 |
| CDX69020 | Canola | nucleus | 54.43 | 36.86 |
| CDY51261 | Canola | nucleus | 37.97 | 36.0 |
| CDY17109 | Canola | nucleus | 50.63 | 35.82 |
| CDY27189 | Canola | nucleus | 36.71 | 35.22 |
| Zm00001d037170_P001 | Maize | nucleus | 50.21 | 35.21 |
| CDX72108 | Canola | nucleus | 37.13 | 35.06 |
| HORVU7Hr1G035500.2 | Barley | nucleus | 48.95 | 34.83 |
| EER96850 | Sorghum | nucleus | 53.59 | 34.7 |
| TraesCS6B01G364000.1 | Wheat | nucleus | 51.05 | 34.47 |
| TraesCS6A01G333600.2 | Wheat | nucleus | 50.63 | 34.29 |
| TraesCS7B01G075600.1 | Wheat | nucleus | 48.52 | 33.82 |
| TraesCS5A01G237200.2 | Wheat | nucleus | 52.32 | 33.7 |
| TraesCS7D01G171300.1 | Wheat | nucleus | 48.95 | 33.62 |
| HORVU6Hr1G080670.1 | Barley | nucleus | 50.63 | 33.61 |
| TraesCS6D01G312800.1 | Wheat | nucleus | 51.05 | 33.61 |
| TraesCS7A01G170600.1 | Wheat | nucleus | 48.52 | 33.53 |
| VIT_03s0063g00310.t01 | Wine grape | nucleus | 57.81 | 33.5 |
| KRH50289 | Soybean | nucleus | 59.92 | 33.49 |
| CDY57581 | Canola | nucleus | 38.4 | 33.46 |
| TraesCS5B01G235600.2 | Wheat | nucleus | 51.48 | 33.33 |
| KXG19586 | Sorghum | nucleus | 48.95 | 33.33 |
| TraesCS5D01G244500.1 | Wheat | nucleus | 51.48 | 33.33 |
| Os09t0456200-01 | Rice | nucleus | 52.74 | 33.24 |
| HORVU5Hr1G068230.1 | Barley | nucleus | 51.48 | 33.24 |
| CDX76014 | Canola | nucleus | 37.97 | 33.21 |
| PGSC0003DMT400059040 | Potato | nucleus | 51.05 | 33.06 |
| Zm00001d044940_P002 | Maize | nucleus | 48.95 | 33.05 |
| CDX67659 | Canola | nucleus | 35.87 | 32.82 |
| Os02t0766700-01 | Rice | nucleus | 49.37 | 32.77 |
| Zm00001d018178_P001 | Maize | nucleus | 48.52 | 32.76 |
| CDY06946 | Canola | nucleus | 37.97 | 32.61 |
| CDY53679 | Canola | nucleus | 37.55 | 32.48 |
| EES07580 | Sorghum | nucleus | 47.26 | 32.37 |
| KRH71134 | Soybean | nucleus | 59.92 | 32.35 |
| OQU80633 | Sorghum | nucleus | 51.9 | 32.2 |
| OQU78764 | Sorghum | nucleus | 42.19 | 32.05 |
| PGSC0003DMT400066603 | Potato | nucleus | 55.27 | 31.64 |
| CDX79959 | Canola | nucleus | 37.55 | 31.56 |
| CDX72445 | Canola | nucleus | 54.43 | 31.46 |
| Solyc01g108080.2.1 | Tomato | nucleus | 54.43 | 31.16 |
| CDY47381 | Canola | nucleus | 37.97 | 31.03 |
| GSMUA_Achr6P30550_001 | Banana | nucleus | 51.9 | 30.9 |
| GSMUA_Achr6P04270_001 | Banana | nucleus | 49.79 | 30.81 |
| Solyc11g044560.1.1 | Tomato | nucleus | 51.48 | 30.58 |
| GSMUA_Achr5P24570_001 | Banana | nucleus | 48.95 | 29.9 |
| Solyc10g050210.1.1 | Tomato | nucleus | 48.95 | 29.9 |
| Zm00001d005884_P002 | Maize | nucleus | 38.4 | 29.84 |
| GSMUA_Achr9P27130_001 | Banana | nucleus | 50.63 | 29.78 |
| GSMUA_Achr5P05690_001 | Banana | nucleus | 50.21 | 29.24 |
| PGSC0003DMT400015892 | Potato | nucleus | 49.79 | 28.5 |
| KXG26981 | Sorghum | nucleus | 19.83 | 28.48 |
| Zm00001d020711_P001 | Maize | nucleus | 46.84 | 27.41 |
| GSMUA_Achr3P07000_001 | Banana | nucleus | 45.99 | 27.05 |
| Zm00001d050018_P007 | Maize | nucleus | 43.88 | 26.6 |
| Zm00001d031790_P002 | Maize | nucleus | 39.66 | 26.33 |
| CDX84141 | Canola | nucleus | 40.51 | 24.37 |
| CDY10500 | Canola | nucleus | 35.44 | 24.28 |
| CDY43738 | Canola | nucleus | 41.35 | 24.26 |
| CDX75056 | Canola | nucleus | 40.51 | 24.06 |
| CDY08701 | Canola | nucleus | 35.02 | 23.99 |
| CDX71528 | Canola | nucleus | 37.13 | 22.51 |
| CDY22378 | Canola | nucleus | 37.13 | 22.28 |
| CDY22311 | Canola | nucleus, plastid | 24.05 | 21.43 |
| CDY54481 | Canola | nucleus | 25.32 | 20.98 |
| CDX89852 | Canola | nucleus, plastid | 23.21 | 20.52 |
| CDY18197 | Canola | nucleus, plastid | 23.21 | 20.45 |
Protein Annotations
| Gene3D:1.20.5.170 | MapMan:15.5.4.1 | GO:A0A078GTX2 | UniProt:A0A078GTX2 | EnsemblPlants:CDY28083 | ProteinID:CDY28083 |
| ProteinID:CDY28083.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003700 | GO:GO:0006139 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00039036001 | InterPro:IPR004827 |
| PFAM:PF00170 | ScanProsite:PS00036 | PFscan:PS50217 | PANTHER:PTHR22952 | PANTHER:PTHR22952:SF158 | SMART:SM00338 |
| SUPFAM:SSF57959 | UniParc:UPI0004EDC8CD | InterPro:bZIP | SEG:seg | : | : |
Description
BnaC06g02640DBnaC06g02640D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GTX2]
Coordinates
chrLK032214:-:56064..57335
Molecular Weight (calculated)
27135.5 Da
IEP (calculated)
10.570
GRAVY (calculated)
-0.932
Length
237 amino acids
Sequence
(BLAST)
(BLAST)
001: MNMDELLKNI WTAEETTQPI MTTTSSIASV QQPRGLVQRQ GSLTLPRTLS QKTVDEVWKH LMSKDSCNGR DAPERQETLG EMTLEDFLLR AGVVKEDGNN
101: SSMILNQAQQ PHQQQLQQPH QRLPPTIYPK HANVTFSAPV MGKAGGRRSN TGVVEKVVER RQKRMIKNRE SAARSRARKQ AYTLELEAEI ENLKQLNQDL
201: QRKQAEIMKT QKNEEPSKQR PWLAKTQCLR RTLTGPW
101: SSMILNQAQQ PHQQQLQQPH QRLPPTIYPK HANVTFSAPV MGKAGGRRSN TGVVEKVVER RQKRMIKNRE SAARSRARKQ AYTLELEAEI ENLKQLNQDL
201: QRKQAEIMKT QKNEEPSKQR PWLAKTQCLR RTLTGPW
001: MGTHIDINNL GGDTSRGNES KPLARQSSLY SLTFDELQST LGEPGKDFGS MNMDELLKNI WTAEDTQAFM TTTSSVAAPG PSGFVPGGNG LQRQGSLTLP
101: RTLSQKTVDE VWKYLNSKEG SNGNTGTDAL ERQQTLGEMT LEDFLLRAGV VKEDNTQQNE NSSSGFYANN GAAGLEFGFG QPNQNSISFN GNNSSMIMNQ
201: APGLGLKVGG TMQQQQQPHQ QQLQQPHQRL PPTIFPKQAN VTFAAPVNMV NRGLFETSAD GPANSNMGGA GGTVTATSPG TSSAENNTWS SPVPYVFGRG
301: RRSNTGLEKV VERRQKRMIK NRESAARSRA RKQAYTLELE AEIESLKLVN QDLQKKQAEI MKTHNSELKE FSKQPPLLAK RQCLRRTLTG PW
101: RTLSQKTVDE VWKYLNSKEG SNGNTGTDAL ERQQTLGEMT LEDFLLRAGV VKEDNTQQNE NSSSGFYANN GAAGLEFGFG QPNQNSISFN GNNSSMIMNQ
201: APGLGLKVGG TMQQQQQPHQ QQLQQPHQRL PPTIFPKQAN VTFAAPVNMV NRGLFETSAD GPANSNMGGA GGTVTATSPG TSSAENNTWS SPVPYVFGRG
301: RRSNTGLEKV VERRQKRMIK NRESAARSRA RKQAYTLELE AEIESLKLVN QDLQKKQAEI MKTHNSELKE FSKQPPLLAK RQCLRRTLTG PW
Arabidopsis Description
ABF1Abscisic acid responsive element-binding factor 1 [Source:UniProtKB/TrEMBL;Acc:F4I3C9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.