Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY17109 | Canola | nucleus | 89.07 | 80.3 |
| Bra040260.1-P | Field mustard | nucleus | 92.72 | 76.92 |
| AT1G45249.6 | Thale cress | nucleus | 85.1 | 59.63 |
| CDY28083 | Canola | nucleus | 39.74 | 50.63 |
| Os06t0211200-01 | Rice | nucleus | 52.32 | 48.77 |
| CDX69020 | Canola | nucleus | 56.29 | 48.57 |
| CDY68227 | Canola | nucleus | 55.96 | 48.42 |
| TraesCS6B01G364000.1 | Wheat | nucleus | 55.3 | 47.58 |
| EES07580 | Sorghum | nucleus | 54.3 | 47.4 |
| HORVU7Hr1G035500.2 | Barley | nucleus | 51.99 | 47.15 |
| TraesCS6A01G333600.2 | Wheat | nucleus | 54.64 | 47.14 |
| HORVU6Hr1G080670.1 | Barley | nucleus | 55.3 | 46.78 |
| Zm00001d037170_P001 | Maize | nucleus | 52.32 | 46.75 |
| CDX99242 | Canola | nucleus | 54.64 | 46.61 |
| Os08t0472000-01 | Rice | nucleus | 49.01 | 46.54 |
| TraesCS7B01G075600.1 | Wheat | nucleus | 52.32 | 46.47 |
| EER96850 | Sorghum | nucleus | 56.29 | 46.45 |
| Os02t0766700-01 | Rice | nucleus | 54.64 | 46.22 |
| CDX92320 | Canola | nucleus | 54.3 | 46.2 |
| TraesCS6D01G312800.1 | Wheat | nucleus | 54.97 | 46.11 |
| KXG19586 | Sorghum | nucleus | 52.98 | 45.98 |
| GSMUA_Achr5P24570_001 | Banana | nucleus | 58.94 | 45.88 |
| Zm00001d018178_P001 | Maize | nucleus | 53.31 | 45.87 |
| TraesCS7D01G171300.1 | Wheat | nucleus | 52.32 | 45.8 |
| TraesCS7A01G170600.1 | Wheat | nucleus | 51.99 | 45.77 |
| CDY18575 | Canola | nucleus | 53.31 | 45.74 |
| GSMUA_Achr6P30550_001 | Banana | nucleus | 60.26 | 45.73 |
| Zm00001d044940_P002 | Maize | nucleus | 52.65 | 45.3 |
| OQU78764 | Sorghum | nucleus | 46.36 | 44.87 |
| Solyc04g078840.2.1 | Tomato | nucleus | 66.23 | 44.74 |
| Os09t0456200-01 | Rice | nucleus | 55.63 | 44.68 |
| GSMUA_Achr9P27130_001 | Banana | nucleus | 59.6 | 44.66 |
| OQU80633 | Sorghum | nucleus | 56.29 | 44.5 |
| GSMUA_Achr6P04270_001 | Banana | nucleus | 56.29 | 44.39 |
| CDY51041 | Canola | nucleus | 48.34 | 44.24 |
| TraesCS5A01G237200.2 | Wheat | nucleus | 53.64 | 44.02 |
| TraesCS5B01G235600.2 | Wheat | nucleus | 53.31 | 43.99 |
| PGSC0003DMT400020670 | Potato | nucleus | 65.56 | 43.71 |
| CDY63041 | Canola | nucleus | 50.99 | 43.5 |
| TraesCS5D01G244500.1 | Wheat | nucleus | 52.65 | 43.44 |
| HORVU5Hr1G068230.1 | Barley | nucleus | 52.32 | 43.05 |
| GSMUA_Achr5P05690_001 | Banana | nucleus | 57.95 | 43.0 |
| CDX82302 | Canola | nucleus | 51.32 | 42.58 |
| GSMUA_Achr3P07000_001 | Banana | nucleus | 56.29 | 42.18 |
| KXG26981 | Sorghum | nucleus | 22.85 | 41.82 |
| CDX72108 | Canola | nucleus | 34.44 | 41.43 |
| CDY51261 | Canola | nucleus | 34.11 | 41.2 |
| CDY58256 | Canola | nucleus | 52.65 | 40.66 |
| CDY27189 | Canola | nucleus | 33.11 | 40.49 |
| CDX72445 | Canola | nucleus | 53.97 | 39.76 |
| Zm00001d031790_P002 | Maize | nucleus | 46.36 | 39.22 |
| CDX67659 | Canola | nucleus | 32.45 | 37.84 |
| Zm00001d020711_P001 | Maize | nucleus | 50.66 | 37.78 |
| CDY57581 | Canola | nucleus | 33.77 | 37.5 |
| CDY06946 | Canola | nucleus | 34.11 | 37.32 |
| CDX76014 | Canola | nucleus | 33.44 | 37.27 |
| Zm00001d050018_P007 | Maize | nucleus | 48.01 | 37.08 |
| CDY53679 | Canola | nucleus | 33.44 | 36.86 |
| CDY47381 | Canola | nucleus | 35.1 | 36.55 |
| CDX79959 | Canola | nucleus | 34.11 | 36.52 |
| Zm00001d005884_P002 | Maize | nucleus | 34.44 | 34.1 |
| CDX84141 | Canola | nucleus | 43.38 | 33.25 |
| CDX75056 | Canola | nucleus | 43.71 | 33.08 |
| CDY43738 | Canola | nucleus | 44.04 | 32.92 |
| CDX71528 | Canola | nucleus | 40.73 | 31.46 |
| CDY10500 | Canola | nucleus | 35.43 | 30.92 |
| CDY22378 | Canola | nucleus | 40.4 | 30.89 |
| CDY08701 | Canola | nucleus | 35.1 | 30.64 |
| CDY22311 | Canola | nucleus, plastid | 20.53 | 23.31 |
| CDY54481 | Canola | nucleus | 21.52 | 22.73 |
| CDY18197 | Canola | nucleus, plastid | 19.21 | 21.56 |
| CDX89852 | Canola | nucleus, plastid | 18.87 | 21.27 |
Protein Annotations
| Gene3D:1.20.5.170 | MapMan:15.5.4.1 | GO:A0A078JGC7 | UniProt:A0A078JGC7 | EnsemblPlants:CDY65560 | ProteinID:CDY65560 |
| ProteinID:CDY65560.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 |
| GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00046805001 | InterPro:IPR004827 | PFAM:PF07716 | ScanProsite:PS00036 | PANTHER:PTHR22952 |
| PANTHER:PTHR22952:SF368 | SMART:SM00338 | UniParc:UPI0004EF47EE | InterPro:bZIP | SEG:seg | : |
Description
BnaA10g28780DBnaA10g28780D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JGC7]
Coordinates
chrLK034835:+:19308..21293
Molecular Weight (calculated)
32950.2 Da
IEP (calculated)
9.988
GRAVY (calculated)
-0.660
Length
302 amino acids
Sequence
(BLAST)
(BLAST)
001: MGNEPPGDGG GGGALTRQGS IYSLTFDEFQ SSLGKDFGSM NMDELLKNIW TAEETQAMAG LPLQRQGSLT LPRTLSTKTV DQVWKDLSKD GGGGTNLTQS
101: QSQRQQTLGE VTLEEFLVRA GVVREEAQIA AKDANTGSSG LMGLGDQSPT NNMGLVQGVV GAVSPVTPVS ADGIGKTNGD SSSLSPSPYM FNGVRGRKSG
201: TVEKVVERRQ RRMIKNRESA ARSRARKQVK IHLISTSFNQ TMFWNAYTVE LEAEVAKLKE ENQELQRKQA KIMEMQKNQE MEMMNIQGGA KKKLRRTESG
301: PW
101: QSQRQQTLGE VTLEEFLVRA GVVREEAQIA AKDANTGSSG LMGLGDQSPT NNMGLVQGVV GAVSPVTPVS ADGIGKTNGD SSSLSPSPYM FNGVRGRKSG
201: TVEKVVERRQ RRMIKNRESA ARSRARKQVK IHLISTSFNQ TMFWNAYTVE LEAEVAKLKE ENQELQRKQA KIMEMQKNQE MEMMNIQGGA KKKLRRTESG
301: PW
001: MDGSMNLGNE PPGDGGGGGG LTRQGSIYSL TFDEFQSSVG KDFGSMNMDE LLKNIWSAEE TQAMASGVVP VLGGGQEGLQ LQRQGSLTLP RTLSQKTVDQ
101: VWKDLSKVGS SGVGGSNLSQ VAQAQSQSQS QRQQTLGEVT LEEFLVRAGV VREEAQVAAR AQIAENNKGG YFGNDANTGF SVEFQQPSPR VVAAGVMGNL
201: GAETANSLQV QGSSLPLNVN GARTTYQQSQ QQQPIMPKQP GFGYGTQMGQ LNSPGIRGGG LVGLGDQSLT NNVGFVQGAS AAIPGALGVG AVSPVTPLSS
301: EGIGKSNGDS SSLSPSPYMF NGGVRGRKSG TVEKVVERRQ RRMIKNRESA ARSRARKQIF TADQTIYWNA YTVELEAEVA KLKEENDELQ RKQARIMEMQ
401: KNQETEMRNL LQGGPKKKLR RTESGPW
101: VWKDLSKVGS SGVGGSNLSQ VAQAQSQSQS QRQQTLGEVT LEEFLVRAGV VREEAQVAAR AQIAENNKGG YFGNDANTGF SVEFQQPSPR VVAAGVMGNL
201: GAETANSLQV QGSSLPLNVN GARTTYQQSQ QQQPIMPKQP GFGYGTQMGQ LNSPGIRGGG LVGLGDQSLT NNVGFVQGAS AAIPGALGVG AVSPVTPLSS
301: EGIGKSNGDS SSLSPSPYMF NGGVRGRKSG TVEKVVERRQ RRMIKNRESA ARSRARKQIF TADQTIYWNA YTVELEAEVA KLKEENDELQ RKQARIMEMQ
401: KNQETEMRNL LQGGPKKKLR RTESGPW
Arabidopsis Description
ABF2abscisic acid responsive elements-binding factor 2 [Source:TAIR;Acc:AT1G45249]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.