CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY65560	Canola	nucleus	80.3	89.07
Bra040260.1-P	Field mustard	nucleus	89.55	82.42
AT1G45249.6	Thale cress	nucleus	81.19	63.11
CDY28083	Canola	nucleus	35.82	50.63
Os06t0211200-01	Rice	nucleus	47.76	49.38
TraesCS6B01G364000.1	Wheat	nucleus	51.04	48.72
CDX69020	Canola	nucleus	50.45	48.29
TraesCS6A01G333600.2	Wheat	nucleus	50.45	48.29
CDY68227	Canola	nucleus	50.15	48.14
HORVU7Hr1G035500.2	Barley	nucleus	47.46	47.75
EES07580	Sorghum	nucleus	49.25	47.69
TraesCS6D01G312800.1	Wheat	nucleus	50.75	47.22
Os02t0766700-01	Rice	nucleus	50.15	47.06
HORVU6Hr1G080670.1	Barley	nucleus	50.15	47.06
EER96850	Sorghum	nucleus	51.34	46.99
TraesCS7B01G075600.1	Wheat	nucleus	47.46	46.76
CDX92320	Canola	nucleus	49.55	46.76
Zm00001d037170_P001	Maize	nucleus	47.16	46.75
CDX99242	Canola	nucleus	49.25	46.61
Os08t0472000-01	Rice	nucleus	44.18	46.54
CDY18575	Canola	nucleus	48.66	46.31
Os09t0456200-01	Rice	nucleus	51.94	46.28
Zm00001d044940_P002	Maize	nucleus	48.36	46.15
TraesCS7D01G171300.1	Wheat	nucleus	47.46	46.09
TraesCS7A01G170600.1	Wheat	nucleus	47.16	46.06
GSMUA_Achr6P30550_001	Banana	nucleus	54.63	45.98
KXG19586	Sorghum	nucleus	47.76	45.98
Solyc04g078840.2.1	Tomato	nucleus	61.19	45.86
TraesCS5B01G235600.2	Wheat	nucleus	49.85	45.63
GSMUA_Achr5P24570_001	Banana	nucleus	52.84	45.62
Zm00001d018178_P001	Maize	nucleus	47.76	45.58
OQU78764	Sorghum	nucleus	42.39	45.51
OQU80633	Sorghum	nucleus	51.64	45.29
CDY51041	Canola	nucleus	44.48	45.15
TraesCS5D01G244500.1	Wheat	nucleus	49.25	45.08
GSMUA_Achr9P27130_001	Banana	nucleus	54.03	44.91
GSMUA_Achr6P04270_001	Banana	nucleus	51.34	44.91
TraesCS5A01G237200.2	Wheat	nucleus	49.25	44.84
PGSC0003DMT400020670	Potato	nucleus	60.6	44.81
HORVU5Hr1G068230.1	Barley	nucleus	48.66	44.41
CDY63041	Canola	nucleus	46.87	44.35
CDX82302	Canola	nucleus	47.76	43.96
GSMUA_Achr5P05690_001	Banana	nucleus	53.13	43.73
KXG26981	Sorghum	nucleus	21.19	43.03
CDX72108	Canola	nucleus	31.94	42.63
GSMUA_Achr3P07000_001	Banana	nucleus	51.04	42.43
CDY51261	Canola	nucleus	31.64	42.4
CDY58256	Canola	nucleus	49.25	42.2
CDY27189	Canola	nucleus	30.45	41.3
CDX72445	Canola	nucleus	49.85	40.73
Zm00001d031790_P002	Maize	nucleus	42.39	39.78
CDX67659	Canola	nucleus	30.45	39.38
Zm00001d020711_P001	Maize	nucleus	46.87	38.77
CDX76014	Canola	nucleus	31.04	38.38
CDY47381	Canola	nucleus	33.13	38.28
Zm00001d050018_P007	Maize	nucleus	44.48	38.11
CDY53679	Canola	nucleus	30.45	37.23
CDY57581	Canola	nucleus	30.15	37.13
CDY06946	Canola	nucleus	30.45	36.96
CDX79959	Canola	nucleus	30.75	36.52
Zm00001d005884_P002	Maize	nucleus	31.34	34.43
CDX75056	Canola	nucleus	40.6	34.09
CDX84141	Canola	nucleus	40.0	34.01
CDY43738	Canola	nucleus	40.9	33.91
CDX71528	Canola	nucleus	37.61	32.23
CDY10500	Canola	nucleus	33.13	32.08
CDY08701	Canola	nucleus	32.84	31.79
CDY22378	Canola	nucleus	36.42	30.89
CDY22311	Canola	nucleus, plastid	19.7	24.81
CDY54481	Canola	nucleus	20.6	24.13
CDY18197	Canola	nucleus, plastid	18.21	22.68
CDX89852	Canola	nucleus, plastid	17.91	22.39

Protein Annotations

Gene3D:1.20.5.170	MapMan:15.5.4.1	GO:A0A078FVJ7	UniProt:A0A078FVJ7	EnsemblPlants:CDY17109	ProteinID:CDY17109
ProteinID:CDY17109.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00095159001	InterPro:IPR004827	PFAM:PF00170	ScanProsite:PS00036	PFscan:PS50217
PANTHER:PTHR22952	PANTHER:PTHR22952:SF368	SMART:SM00338	SUPFAM:SSF57959	UniParc:UPI0004EEABCA	InterPro:bZIP
SEG:seg	:	:	:	:	:

Description

BnaC06g00420DBnaC06g00420D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FVJ7]

Coordinates

chrLK032070:+:666900..668718

Molecular Weight (calculated)

36022.9 Da

IEP (calculated)

9.842

GRAVY (calculated)

-0.563

Length

335 amino acids

Sequence
(BLAST)

001: MKCMILVTSS GSRSNMNFKN NNNNMGNEPP GDGSGGAALT RQGSIYSLTF DEFQSSLGKD FGSMNMDELL KNIWTAEETQ AMAVAASTSG VIPLAGGGQE
101: GLPLQRQGSL TLPRTLSTKT VDQVWKDLSK DGGGGTNLTQ SQRQQTLGEV TLEEFLVRAG VVREEAQIAA KDANTGFSVQ ASPQVVPGLM GNLGAETSLN
201: MGLVQGVVGA AVSPVTPVSA DGIGKNNGDS SSLSPSPYMF NGGVRGRKSG TVEKVVERRQ RRMIKNRESA ARSRARKQAY TVELEAEVAK LKEENEELQR
301: KQAKIMEMQK NQEMEMMNIQ GGAKKRLRRT ESGPW

Best Arabidopsis Sequence Match ( AT1G45249.9 )
(BLAST)

001: MDGSMNLGNE PPGDGGGGGG LTRQGSIYSL TFDEFQSSVG KDFGSMNMDE LLKNIWSAEE TQAMASGVVP VLGGGQEGLQ LQRQGSLTLP RTLSQKTVDQ
101: VWKDLSKVGS SGVGGSNLSQ VAQAQSQSQS QRQQTLGEVT LEEFLVRAGV VREEAQVAAR AQIAENNKGG YFGNDANTGF SVEFQQPSPR VVAAGVMGNL
201: GAETANSLQV QGSSLPLNVN GARTTYQQSQ QQQPIMPKQP GFGYGTQMGQ LNSPGIRGGG LVGLGDQSLT NNVGFVQGAS AAIPGALGVG AVSPVTPLSS
301: EGIGKSNGDS SSLSPSPYMF NGGVRGRKSG TVEKVVERRQ RRMIKNRESA ARSRARKQVN LFITIYLCTL DCVISQKICK VNWLAYLVVK FFNHNEALNS
401: KRKVSCVK

Arabidopsis Description

ABF2abscisic acid responsive elements-binding factor 2 [Source:TAIR;Acc:AT1G45249]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.