Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY27189 | Canola | nucleus | 91.63 | 93.12 |
| CDY51261 | Canola | nucleus | 88.84 | 89.2 |
| Bra007276.1-P | Field mustard | nucleus | 98.01 | 87.23 |
| Bra007274.1-P | Field mustard | nucleus | 97.61 | 86.88 |
| CDX76014 | Canola | nucleus | 88.05 | 81.55 |
| CDY47381 | Canola | nucleus | 90.44 | 78.28 |
| CDX67659 | Canola | nucleus | 80.48 | 77.99 |
| AT3G56850.1 | Thale cress | nucleus | 91.24 | 77.1 |
| CDY53679 | Canola | nucleus | 72.91 | 66.79 |
| CDX79959 | Canola | nucleus | 72.91 | 64.89 |
| CDY06946 | Canola | nucleus | 71.31 | 64.86 |
| CDY57581 | Canola | nucleus | 68.53 | 63.24 |
| KRH64894 | Soybean | nucleus | 64.54 | 51.27 |
| KRG94991 | Soybean | nucleus | 64.94 | 50.94 |
| KRG94206 | Soybean | nucleus | 64.54 | 50.47 |
| KRH57716 | Soybean | nucleus | 61.35 | 47.24 |
| PGSC0003DMT400072260 | Potato | nucleus | 63.35 | 45.82 |
| PGSC0003DMT400018574 | Potato | nucleus | 58.17 | 45.77 |
| Solyc10g081350.1.1 | Tomato | nucleus | 62.95 | 45.14 |
| Solyc10g076920.1.1 | Tomato | nucleus | 42.63 | 37.81 |
| CDY28083 | Canola | nucleus | 35.06 | 37.13 |
| CDY65560 | Canola | nucleus | 41.43 | 34.44 |
| CDY51041 | Canola | nucleus | 43.03 | 32.73 |
| CDY17109 | Canola | nucleus | 42.63 | 31.94 |
| CDY68227 | Canola | nucleus | 40.24 | 28.94 |
| CDX69020 | Canola | nucleus | 39.84 | 28.57 |
| CDX92320 | Canola | nucleus | 40.24 | 28.45 |
| CDX99242 | Canola | nucleus | 39.84 | 28.25 |
| CDX84141 | Canola | nucleus | 44.22 | 28.17 |
| CDY18575 | Canola | nucleus | 39.44 | 28.12 |
| CDX75056 | Canola | nucleus | 44.62 | 28.07 |
| CDY63041 | Canola | nucleus | 39.44 | 27.97 |
| CDY43738 | Canola | nucleus | 44.22 | 27.48 |
| CDX82302 | Canola | nucleus | 39.04 | 26.92 |
| CDY08701 | Canola | nucleus | 36.65 | 26.59 |
| CDY10500 | Canola | nucleus | 36.65 | 26.59 |
| CDX72445 | Canola | nucleus | 41.83 | 25.61 |
| CDY58256 | Canola | nucleus | 39.84 | 25.58 |
| CDY54481 | Canola | nucleus | 27.89 | 24.48 |
| CDY22311 | Canola | nucleus, plastid | 25.9 | 24.44 |
| CDY18197 | Canola | nucleus, plastid | 25.1 | 23.42 |
| CDX89852 | Canola | nucleus, plastid | 24.7 | 23.13 |
| CDX71528 | Canola | nucleus | 35.86 | 23.02 |
| CDY22378 | Canola | nucleus | 35.46 | 22.53 |
Protein Annotations
| Gene3D:1.20.5.170 | MapMan:15.5.4.1 | GO:A0A078CAT7 | EnsemblPlants:CDX72108 | ProteinID:CDX72108 | ProteinID:CDX72108.1 |
| ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 |
| GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| EnsemblPlantsGene:GSBRNA2T00155911001 | InterPro:IPR004827 | PFAM:PF00170 | ScanProsite:PS00036 | PFscan:PS50217 | PANTHER:PTHR22952 |
| PANTHER:PTHR22952:SF137 | SMART:SM00338 | SUPFAM:SSF57959 | UniParc:UPI0004EDB32F | InterPro:bZIP | SEG:seg |
Description
BnaC08g27660D
Coordinates
chrLK031795:+:2418501..2419971
Molecular Weight (calculated)
28318.8 Da
IEP (calculated)
10.098
GRAVY (calculated)
-0.885
Length
251 amino acids
Sequence
(BLAST)
(BLAST)
001: MDSQREPRSH QSLNRQGSLY SLTLDEVQTH LGSSGKALGS MNLDELLKSV CSGSLTFPRD LSKKTVEEVW KDIQQDKNGG GSGHERRDKQ PTLGEMTLED
101: LLLKAGVVTE TQNIAQVAPW VQYHQLPSMP QPQSFMPYPV ADMQTMVSQS SLMGGLSDTQ TPGRKRVASG EVVEKTVERK QKRMIKNRES AARSRARKQQ
201: AYTHELEIKV SRLEEENERL RRQKEVEKIL PSAPPPLDPK RQLRRTSSAP F
101: LLLKAGVVTE TQNIAQVAPW VQYHQLPSMP QPQSFMPYPV ADMQTMVSQS SLMGGLSDTQ TPGRKRVASG EVVEKTVERK QKRMIKNRES AARSRARKQQ
201: AYTHELEIKV SRLEEENERL RRQKEVEKIL PSAPPPLDPK RQLRRTSSAP F
001: MDSQRGIVEQ AKSQSLNRQS SLYSLTLDEV QNHLGSSGKA LGSMNLDELL KSVCSVEANQ PSSMAVNGGA AAQEGLSRQG SLTLPRDLSK KTVDEVWKDI
101: QQNKNGGSAH ERRDKQPTLG EMTLEDLLLK AGVVTETIPG SNHDGPVGGG SAGSGAGLGQ NITQVGPWIQ YHQLPSMPQP QAFMPYPVSD MQAMVSQSSL
201: MGGLSDTQTP GRKRVASGEV VEKTVERRQK RMIKNRESAA RSRARKQAYT HELEIKVSRL EEENERLRKQ KEVEKILPSV PPPDPKRQLR RTSSAPF
101: QQNKNGGSAH ERRDKQPTLG EMTLEDLLLK AGVVTETIPG SNHDGPVGGG SAGSGAGLGQ NITQVGPWIQ YHQLPSMPQP QAFMPYPVSD MQAMVSQSSL
201: MGGLSDTQTP GRKRVASGEV VEKTVERRQK RMIKNRESAA RSRARKQAYT HELEIKVSRL EEENERLRKQ KEVEKILPSV PPPDPKRQLR RTSSAPF
Arabidopsis Description
DPBF3ABSCISIC ACID-INSENSITIVE 5-like protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LES3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.