Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra036210.1-P | Field mustard | nucleus | 100.0 | 100.0 |
| CDY00093 | Canola | nucleus | 94.9 | 95.28 |
| CDX86364 | Canola | nucleus | 77.65 | 74.16 |
| CDY04085 | Canola | nucleus | 71.76 | 73.49 |
| CDY44386 | Canola | nucleus | 72.16 | 73.31 |
| CDX85274 | Canola | nucleus | 76.08 | 73.21 |
| AT3G29575.1 | Thale cress | nucleus | 65.49 | 72.29 |
| Solyc02g066850.1.1 | Tomato | cytosol | 16.86 | 65.15 |
| GSMUA_Achr4P32830_001 | Banana | nucleus | 30.59 | 57.35 |
| PGSC0003DMT400003712 | Potato | nucleus | 52.16 | 42.36 |
| Solyc02g088910.2.1 | Tomato | nucleus | 51.37 | 41.32 |
| PGSC0003DMT400036544 | Potato | cytosol | 19.61 | 39.37 |
| CDY33807 | Canola | nucleus | 47.06 | 38.84 |
| HORVU4Hr1G035770.1 | Barley | plastid | 16.86 | 38.74 |
| CDY16104 | Canola | nucleus | 46.67 | 38.51 |
| Solyc02g032680.1.1 | Tomato | cytosol | 18.04 | 38.33 |
| CDY36406 | Canola | nucleus | 42.75 | 37.33 |
| GSMUA_Achr9P09330_001 | Banana | nucleus | 49.41 | 37.28 |
| Solyc02g032710.1.1 | Tomato | cytosol | 19.22 | 36.3 |
| VIT_14s0068g00300.t01 | Wine grape | nucleus | 54.9 | 36.18 |
| PGSC0003DMT400089614 | Potato | cytosol | 19.22 | 36.03 |
| CDX98125 | Canola | nucleus | 44.71 | 35.74 |
| KRH01286 | Soybean | nucleus | 52.55 | 35.54 |
| GSMUA_Achr6P34980_001 | Banana | cytosol | 39.22 | 35.34 |
| GSMUA_Achr5P01470_001 | Banana | nucleus | 39.61 | 35.19 |
| CDX74273 | Canola | mitochondrion | 37.65 | 35.16 |
| KRH45047 | Soybean | nucleus | 52.16 | 34.73 |
| PGSC0003DMT400095238 | Potato | cytosol, mitochondrion | 17.25 | 34.65 |
| CDX91976 | Canola | mitochondrion | 38.04 | 34.04 |
| Solyc02g066870.1.1 | Tomato | cytosol | 20.78 | 33.76 |
| CDY07354 | Canola | nucleus | 45.88 | 33.72 |
| CDX95951 | Canola | nucleus | 44.31 | 33.63 |
| CDY04272 | Canola | nucleus | 45.49 | 33.53 |
| Solyc02g066860.1.1 | Tomato | cytosol | 16.86 | 33.08 |
| CDY68672 | Canola | cytosol, mitochondrion, nucleus, plastid | 35.69 | 32.97 |
| Solyc02g032690.1.1 | Tomato | cytosol | 30.2 | 32.08 |
| TraesCS3B01G594200.1 | Wheat | cytosol | 27.84 | 31.42 |
| Solyc02g030610.1.1 | Tomato | cytosol | 19.61 | 31.25 |
| Solyc02g030650.1.1 | Tomato | nucleus | 21.96 | 31.11 |
| CDY43256 | Canola | mitochondrion | 34.12 | 31.07 |
| CDY40905 | Canola | nucleus | 41.18 | 30.09 |
| TraesCS3D01G532000.1 | Wheat | nucleus | 20.0 | 30.0 |
| Solyc02g032670.1.1 | Tomato | cytosol | 30.2 | 29.39 |
| Os03t0214200-01 | Rice | nucleus | 41.96 | 26.68 |
| Solyc02g030630.1.1 | Tomato | cytosol | 31.76 | 26.47 |
| TraesCS4B01G246800.1 | Wheat | nucleus | 25.1 | 26.45 |
| EER89528 | Sorghum | nucleus | 36.47 | 26.05 |
| TraesCS4A01G058100.1 | Wheat | nucleus | 25.1 | 26.02 |
| Solyc02g030620.1.1 | Tomato | cytosol | 30.2 | 26.01 |
| CDY08008 | Canola | cytosol | 29.02 | 25.78 |
| EER92642 | Sorghum | nucleus | 39.61 | 25.63 |
| CDX74054 | Canola | nucleus | 28.63 | 25.35 |
| TraesCS4D01G246100.2 | Wheat | nucleus | 23.92 | 24.3 |
| Zm00001d048085_P002 | Maize | nucleus | 37.25 | 24.17 |
| Solyc01g058740.2.1 | Tomato | cytosol | 6.67 | 23.94 |
| TraesCS4B01G247000.1 | Wheat | nucleus | 36.47 | 23.48 |
| CDY34910 | Canola | peroxisome | 25.49 | 23.3 |
| HORVU4Hr1G067930.1 | Barley | nucleus | 36.86 | 23.27 |
| TraesCS4D01G246400.1 | Wheat | nucleus | 36.08 | 23.23 |
| Solyc02g066900.1.1 | Tomato | cytosol | 27.45 | 22.08 |
| Solyc02g066890.1.1 | Tomato | cytosol | 29.41 | 20.89 |
| Solyc02g066840.1.1 | Tomato | cytosol | 12.16 | 20.67 |
| TraesCS4A01G057800.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 37.65 | 18.79 |
| Solyc02g032720.1.1 | Tomato | cytosol | 26.67 | 18.38 |
| PGSC0003DMT400036545 | Potato | nucleus | 30.98 | 16.16 |
| Solyc02g030600.1.1 | Tomato | cytosol | 11.76 | 14.35 |
Protein Annotations
| EnsemblPlants:CDY19988 | EnsemblPlantsGene:GSBRNA2T00009810001 | GO:A0A078G5M6 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 |
| GO:GO:0009987 | InterPro:Jas | InterPro:NINJA_B | InterPro:Ninja_fam | InterPro:Ninja_motif | ncoils:Coil |
| PANTHER:PTHR31413 | PANTHER:PTHR31413:SF6 | PFAM:PF07897 | PFAM:PF16135 | PFAM:PF16136 | ProteinID:CDY19988 |
| ProteinID:CDY19988.1 | SEG:seg | UniParc:UPI0002541DE9 | UniProt:A0A078G5M6 | MapMan:15.5.53.3 | : |
Description
BnaA09g02630DBnaA09g02630D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G5M6]
Coordinates
chrLK032102:+:289139..290707
Molecular Weight (calculated)
27871.2 Da
IEP (calculated)
9.798
GRAVY (calculated)
-0.675
Length
255 amino acids
Sequence
(BLAST)
(BLAST)
001: MSGAEKRDNG EEIPRDLLQR FMSKKQKSSV EAGEVEIELD LGLSLNGRFG VDPLAKTRLL TRSSSIPDLV VNGGRTELSR TCSLPVETEE WRKRKELQSL
101: RRLEAKRKRL EKQRNVRVLR EKHKAGGGGG EEGSIGSSGS GSSGLSELDT SPSPPVQATT KASIERSPSS TQPLPENQAA RNMIDDMPCV STTGDGPNGR
201: KIDGFLYRYR KGDEVRIVCV CHGSFLTPAE FVKHAGGRDV AHPLKHIVVN PSPFL
101: RRLEAKRKRL EKQRNVRVLR EKHKAGGGGG EEGSIGSSGS GSSGLSELDT SPSPPVQATT KASIERSPSS TQPLPENQAA RNMIDDMPCV STTGDGPNGR
201: KIDGFLYRYR KGDEVRIVCV CHGSFLTPAE FVKHAGGRDV AHPLKHIVVN PSPFL
001: MSKKQRLSEE DGEVEIELDL GLSLNGRFGV DPLAKTRLMR STSVLDLVVN DRSGLSRTCS LPVETEEEWR KRKELQSLRR LEAKRKRSEK QRKHKACGGE
101: EKVVEEGSIG SSGSGSSGLS EVDTLLPPVQ ATTNKSVETS PSSAQSQPEN LGKEASQNII EDMPFVSTTG DGPNGKKING FLYRYRKGEE VRIVCVCHGS
201: FLSPAEFVKH AGGGDVAHPL KHIVVNPSPF L
101: EKVVEEGSIG SSGSGSSGLS EVDTLLPPVQ ATTNKSVETS PSSAQSQPEN LGKEASQNII EDMPFVSTTG DGPNGKKING FLYRYRKGEE VRIVCVCHGS
201: FLSPAEFVKH AGGGDVAHPL KHIVVNPSPF L
Arabidopsis Description
AFP3Ninja-family protein AFP3 [Source:UniProtKB/Swiss-Prot;Acc:Q94F39]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.