Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY44386 | Canola | nucleus | 95.58 | 94.82 |
| Bra033105.1-P | Field mustard | nucleus | 81.53 | 93.12 |
| CDY19988 | Canola | nucleus | 73.49 | 71.76 |
| CDY00093 | Canola | nucleus | 73.09 | 71.65 |
| AT3G29575.1 | Thale cress | nucleus | 66.27 | 71.43 |
| CDX85274 | Canola | nucleus | 71.89 | 67.55 |
| CDX86364 | Canola | nucleus | 71.89 | 67.04 |
| Solyc02g066850.1.1 | Tomato | cytosol | 17.27 | 65.15 |
| GSMUA_Achr4P32830_001 | Banana | nucleus | 30.92 | 56.62 |
| PGSC0003DMT400003712 | Potato | nucleus | 52.61 | 41.72 |
| PGSC0003DMT400036544 | Potato | cytosol | 20.48 | 40.16 |
| Solyc02g088910.2.1 | Tomato | nucleus | 51.0 | 40.06 |
| Solyc02g032680.1.1 | Tomato | cytosol | 18.47 | 38.33 |
| PGSC0003DMT400089614 | Potato | cytosol | 20.88 | 38.24 |
| CDY33807 | Canola | nucleus | 45.38 | 36.57 |
| Solyc02g032710.1.1 | Tomato | cytosol | 19.68 | 36.3 |
| CDY16104 | Canola | nucleus | 44.58 | 35.92 |
| GSMUA_Achr9P09330_001 | Banana | nucleus | 47.79 | 35.21 |
| CDX74273 | Canola | mitochondrion | 38.55 | 35.16 |
| CDY36406 | Canola | nucleus | 40.96 | 34.93 |
| PGSC0003DMT400095238 | Potato | cytosol, mitochondrion | 17.67 | 34.65 |
| Solyc02g066870.1.1 | Tomato | cytosol | 21.69 | 34.39 |
| HORVU4Hr1G035770.1 | Barley | plastid | 15.26 | 34.23 |
| CDX98125 | Canola | nucleus | 43.78 | 34.17 |
| CDX91976 | Canola | mitochondrion | 38.96 | 34.04 |
| VIT_14s0068g00300.t01 | Wine grape | nucleus | 52.61 | 33.85 |
| Solyc02g066860.1.1 | Tomato | cytosol | 17.67 | 33.85 |
| CDY68672 | Canola | cytosol, mitochondrion, nucleus, plastid | 37.35 | 33.7 |
| CDX95951 | Canola | nucleus | 44.58 | 33.04 |
| KRH01286 | Soybean | nucleus | 49.8 | 32.89 |
| KRH45047 | Soybean | nucleus | 50.2 | 32.64 |
| GSMUA_Achr5P01470_001 | Banana | nucleus | 37.35 | 32.4 |
| GSMUA_Achr6P34980_001 | Banana | cytosol | 36.55 | 32.16 |
| Solyc02g030610.1.1 | Tomato | cytosol | 20.48 | 31.88 |
| Solyc02g030650.1.1 | Tomato | nucleus | 22.89 | 31.67 |
| CDY43256 | Canola | mitochondrion | 35.34 | 31.43 |
| CDY07354 | Canola | nucleus | 43.37 | 31.12 |
| CDY04272 | Canola | nucleus | 42.57 | 30.64 |
| CDY40905 | Canola | nucleus | 42.17 | 30.09 |
| Solyc02g032690.1.1 | Tomato | cytosol | 28.11 | 29.17 |
| TraesCS3D01G532000.1 | Wheat | nucleus | 19.68 | 28.82 |
| TraesCS3B01G594200.1 | Wheat | cytosol | 24.1 | 26.55 |
| Solyc02g032670.1.1 | Tomato | cytosol | 26.91 | 25.57 |
| Os03t0214200-01 | Rice | nucleus | 40.56 | 25.19 |
| Solyc02g030630.1.1 | Tomato | cytosol | 30.12 | 24.51 |
| TraesCS4A01G058100.1 | Wheat | nucleus | 24.1 | 24.39 |
| TraesCS4B01G246800.1 | Wheat | nucleus | 23.69 | 24.38 |
| TraesCS4D01G246100.2 | Wheat | nucleus | 24.1 | 23.9 |
| EER92642 | Sorghum | nucleus | 37.75 | 23.86 |
| EER89528 | Sorghum | nucleus | 33.73 | 23.53 |
| Solyc02g030620.1.1 | Tomato | cytosol | 27.71 | 23.31 |
| CDY08008 | Canola | cytosol | 26.51 | 23.0 |
| Zm00001d048085_P002 | Maize | nucleus | 35.74 | 22.65 |
| CDX74054 | Canola | nucleus | 26.1 | 22.57 |
| Solyc01g058740.2.1 | Tomato | cytosol | 6.43 | 22.54 |
| TraesCS4B01G247000.1 | Wheat | nucleus | 34.94 | 21.97 |
| TraesCS4D01G246400.1 | Wheat | nucleus | 34.94 | 21.97 |
| CDY34910 | Canola | peroxisome | 24.5 | 21.86 |
| HORVU4Hr1G067930.1 | Barley | nucleus | 34.94 | 21.53 |
| Solyc02g066900.1.1 | Tomato | cytosol | 26.91 | 21.14 |
| Solyc02g066840.1.1 | Tomato | cytosol | 12.05 | 20.0 |
| Solyc02g066890.1.1 | Tomato | cytosol | 28.11 | 19.5 |
| Solyc02g032720.1.1 | Tomato | cytosol | 25.7 | 17.3 |
| TraesCS4A01G057800.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 35.34 | 17.22 |
| PGSC0003DMT400036545 | Potato | nucleus | 30.12 | 15.34 |
| Solyc02g030600.1.1 | Tomato | cytosol | 12.45 | 14.83 |
Protein Annotations
| EnsemblPlants:CDY04085 | EnsemblPlantsGene:GSBRNA2T00117704001 | GO:A0A078EQ53 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 |
| GO:GO:0009987 | InterPro:Jas | InterPro:NINJA_B | InterPro:Ninja_fam | InterPro:Ninja_motif | ncoils:Coil |
| PANTHER:PTHR31413 | PANTHER:PTHR31413:SF6 | PFAM:PF07897 | PFAM:PF16135 | PFAM:PF16136 | ProteinID:CDY04085 |
| ProteinID:CDY04085.1 | SEG:seg | UniParc:UPI0004EDEC90 | MapMan:15.5.53.3 | : | : |
Description
BnaC02g38000D
Coordinates
chrLK031948:-:983276..984137
Molecular Weight (calculated)
27683.2 Da
IEP (calculated)
10.122
GRAVY (calculated)
-0.655
Length
249 amino acids
Sequence
(BLAST)
(BLAST)
001: MSEAEKRADG EIYRNIPRRD LLQSFMSKKQ KLSVQEGAVE IELDLGLSLN GRFGVDPLAT KRLLARSPSI PDFVVNDVRS ELSRTFSLPV ETEELRKRKE
101: LQSLRRLEAK RKRSEKQRNA RDQKHKADKI VEEGSSGSGS SGLSELDTAP PPVQATTNKP KETSPASAQP LPAARNIIED MPCVSTTGDG PNRKKIDGFL
201: YRYMKGQEVR IVCVCHGSFL TPAEFVKHAG GRDVTHPLKH IVVNPSPFL
101: LQSLRRLEAK RKRSEKQRNA RDQKHKADKI VEEGSSGSGS SGLSELDTAP PPVQATTNKP KETSPASAQP LPAARNIIED MPCVSTTGDG PNRKKIDGFL
201: YRYMKGQEVR IVCVCHGSFL TPAEFVKHAG GRDVTHPLKH IVVNPSPFL
001: MSKKQRLSEE DGEVEIELDL GLSLNGRFGV DPLAKTRLMR STSVLDLVVN DRSGLSRTCS LPVETEEEWR KRKELQSLRR LEAKRKRSEK QRKHKACGGE
101: EKVVEEGSIG SSGSGSSGLS EVDTLLPPVQ ATTNKSVETS PSSAQSQPEN LGKEASQNII EDMPFVSTTG DGPNGKKING FLYRYRKGEE VRIVCVCHGS
201: FLSPAEFVKH AGGGDVAHPL KHIVVNPSPF L
101: EKVVEEGSIG SSGSGSSGLS EVDTLLPPVQ ATTNKSVETS PSSAQSQPEN LGKEASQNII EDMPFVSTTG DGPNGKKING FLYRYRKGEE VRIVCVCHGS
201: FLSPAEFVKH AGGGDVAHPL KHIVVNPSPF L
Arabidopsis Description
AFP3Ninja-family protein AFP3 [Source:UniProtKB/Swiss-Prot;Acc:Q94F39]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.