Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 5
- cytosol 1
- extracellular 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU3Hr1G084360.2 | |
| HORVU4Hr1G035770.1 | |
| HORVU4Hr1G067930.1 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc02g066850.1.1 | Tomato | cytosol | 29.73 | 50.0 |
| Bra027018.1-P | Field mustard | cytosol | 25.23 | 47.46 |
| Solyc06g083290.1.1 | Tomato | cytosol, extracellular, plastid | 27.93 | 45.59 |
| TraesCS3D01G532000.1 | Wheat | nucleus | 46.85 | 30.59 |
| Solyc02g032680.1.1 | Tomato | cytosol | 27.93 | 25.83 |
| TraesCS3B01G594200.1 | Wheat | cytosol | 47.75 | 23.45 |
| PGSC0003DMT400036544 | Potato | cytosol | 26.13 | 22.83 |
| TraesCS4B01G246800.1 | Wheat | nucleus | 48.65 | 22.31 |
| TraesCS4D01G246100.2 | Wheat | nucleus | 49.55 | 21.91 |
| Solyc02g066860.1.1 | Tomato | cytosol | 25.23 | 21.54 |
| Solyc02g032710.1.1 | Tomato | cytosol | 26.13 | 21.48 |
| PGSC0003DMT400089614 | Potato | cytosol | 26.13 | 21.32 |
| TraesCS4A01G058100.1 | Wheat | nucleus | 46.85 | 21.14 |
| Solyc02g032140.1.1 | Tomato | cytosol | 23.42 | 20.97 |
| PGSC0003DMT400095238 | Potato | cytosol, mitochondrion | 23.42 | 20.47 |
| Solyc02g066870.1.1 | Tomato | cytosol | 27.03 | 19.11 |
| Solyc02g030650.1.1 | Tomato | nucleus | 30.63 | 18.89 |
| Solyc02g030610.1.1 | Tomato | cytosol | 27.03 | 18.75 |
| AT3G29575.1 | Thale cress | nucleus | 36.04 | 17.32 |
| HORVU2Hr1G032690.1 | Barley | cytosol | 36.04 | 16.95 |
| CDY00093 | Canola | nucleus | 38.74 | 16.93 |
| Bra036210.1-P | Field mustard | nucleus | 38.74 | 16.86 |
| CDY19988 | Canola | nucleus | 38.74 | 16.86 |
| Solyc02g032690.1.1 | Tomato | cytosol | 34.23 | 15.83 |
| CDY44386 | Canola | nucleus | 35.14 | 15.54 |
| Solyc01g058740.2.1 | Tomato | cytosol | 9.91 | 15.49 |
| CDY04085 | Canola | nucleus | 34.23 | 15.26 |
| KRH54707 | Soybean | nucleus | 34.23 | 15.26 |
| CDX85274 | Canola | nucleus | 34.23 | 14.34 |
| CDX86364 | Canola | nucleus | 34.23 | 14.23 |
| Bra025400.1-P | Field mustard | nucleus | 34.23 | 14.23 |
| CDX74273 | Canola | mitochondrion | 34.23 | 13.92 |
| KRH63223 | Soybean | nucleus | 31.53 | 13.46 |
| GSMUA_Achr3P30390_001 | Banana | nucleus | 39.64 | 13.29 |
| PGSC0003DMT400051959 | Potato | nucleus | 30.63 | 13.23 |
| Bra001031.1-P | Field mustard | mitochondrion | 32.43 | 13.19 |
| PGSC0003DMT400003712 | Potato | nucleus | 36.94 | 13.06 |
| Bra039157.1-P | Field mustard | cytosol | 32.43 | 13.0 |
| CDX91976 | Canola | mitochondrion | 33.33 | 12.98 |
| Solyc02g088910.2.1 | Tomato | nucleus | 36.94 | 12.93 |
| GSMUA_Achr4P14370_001 | Banana | nucleus | 38.74 | 12.84 |
| CDY68672 | Canola | cytosol, mitochondrion, nucleus, plastid | 31.53 | 12.68 |
| CDY36406 | Canola | nucleus | 33.33 | 12.67 |
| CDY43256 | Canola | mitochondrion | 31.53 | 12.5 |
| Bra019706.1-P | Field mustard | nucleus | 35.14 | 12.34 |
| Bra026891.1-P | Field mustard | nucleus | 34.23 | 12.3 |
| CDY16104 | Canola | nucleus | 34.23 | 12.3 |
| CDY33807 | Canola | nucleus | 34.23 | 12.3 |
| CDX98125 | Canola | nucleus | 35.14 | 12.23 |
| Solyc02g032670.1.1 | Tomato | cytosol | 28.83 | 12.21 |
| GSMUA_Achr3P15940_001 | Banana | nucleus | 37.84 | 12.03 |
| Os03t0214200-01 | Rice | nucleus | 43.24 | 11.97 |
| KRH03141 | Soybean | nucleus | 25.23 | 11.91 |
| CDY04272 | Canola | nucleus | 36.94 | 11.85 |
| Bra004004.1-P | Field mustard | nucleus | 36.94 | 11.85 |
| CDY07354 | Canola | nucleus | 36.94 | 11.82 |
| CDX74054 | Canola | nucleus | 30.63 | 11.81 |
| Bra001242.1-P | Field mustard | nucleus | 30.63 | 11.81 |
| KRH56804 | Soybean | nucleus | 29.73 | 11.7 |
| EER92642 | Sorghum | nucleus | 41.44 | 11.68 |
| HORVU4Hr1G067930.1 | Barley | nucleus | 42.34 | 11.63 |
| GSMUA_Achr7P26660_001 | Banana | nucleus | 36.94 | 11.61 |
| AT3G07255.1 | Thale cress | nucleus | 30.63 | 11.6 |
| AT3G02140.1 | Thale cress | cytosol | 33.33 | 11.6 |
| GSMUA_Achr6P27430_001 | Banana | nucleus | 36.94 | 11.55 |
| CDY08008 | Canola | cytosol | 29.73 | 11.5 |
| Solyc02g066900.1.1 | Tomato | cytosol | 32.43 | 11.36 |
| EER89528 | Sorghum | nucleus | 36.04 | 11.2 |
| Solyc02g030620.1.1 | Tomato | cytosol | 29.73 | 11.15 |
| KRH01286 | Soybean | nucleus | 37.84 | 11.14 |
| VIT_01s0011g00410.t01 | Wine grape | nucleus | 36.04 | 11.11 |
| CDY34910 | Canola | peroxisome | 27.93 | 11.11 |
| AT1G69260.1 | Thale cress | nucleus | 34.23 | 11.01 |
| KRH45047 | Soybean | nucleus | 37.84 | 10.97 |
| Zm00001d048085_P002 | Maize | nucleus | 38.74 | 10.94 |
| AT1G13740.1 | Thale cress | nucleus | 34.23 | 10.92 |
| VIT_00s0216g00060.t01 | Wine grape | nucleus | 35.14 | 10.89 |
| Solyc02g030630.1.1 | Tomato | cytosol | 29.73 | 10.78 |
| Bra040367.1-P | Field mustard | nucleus | 27.03 | 10.75 |
| VIT_14s0068g00300.t01 | Wine grape | nucleus | 36.94 | 10.59 |
| GSMUA_Achr9P07070_001 | Banana | mitochondrion | 40.54 | 10.56 |
| Bra004368.1-P | Field mustard | nucleus | 30.63 | 10.43 |
| Solyc04g005380.2.1 | Tomato | nucleus | 36.04 | 10.42 |
| PGSC0003DMT400045906 | Potato | nucleus | 36.04 | 10.31 |
| KRH66123 | Soybean | nucleus | 32.43 | 10.17 |
| CDX95951 | Canola | nucleus | 30.63 | 10.12 |
| CDY40905 | Canola | nucleus | 31.53 | 10.03 |
| Solyc02g066890.1.1 | Tomato | cytosol | 32.43 | 10.03 |
| KRH07456 | Soybean | nucleus | 31.53 | 10.0 |
| KRH75067 | Soybean | nucleus | 36.04 | 9.83 |
| KRH70923 | Soybean | nucleus | 36.04 | 9.73 |
| Bra033105.1-P | Field mustard | nucleus | 18.92 | 9.63 |
| Solyc02g032720.1.1 | Tomato | cytosol | 31.53 | 9.46 |
| PGSC0003DMT400072760 | Potato | nucleus | 34.23 | 9.25 |
| Solyc05g012210.2.1 | Tomato | extracellular, golgi | 35.14 | 8.42 |
| PGSC0003DMT400091590 | Potato | cytosol | 29.73 | 8.09 |
| VIT_17s0000g05280.t01 | Wine grape | nucleus | 29.73 | 7.73 |
| PGSC0003DMT400036545 | Potato | nucleus | 31.53 | 7.16 |
| Solyc02g066840.1.1 | Tomato | cytosol | 8.11 | 6.0 |
| Solyc02g030600.1.1 | Tomato | cytosol | 5.41 | 2.87 |
Protein Annotations
| EnsemblPlants:HORVU4Hr1G035770.1 | EnsemblPlantsGene:HORVU4Hr1G035770 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0009987 |
| InterPro:Jas | InterPro:Ninja_fam | PANTHER:PTHR31413 | PANTHER:PTHR31413:SF9 | PFAM:PF16135 | SEG:seg |
| UniParc:UPI000B469F6B | UniProt:A0A287NSZ5 | MapMan:15.5.53.3 | : | : | : |
Description
No Description!
Coordinates
chrchr4H:+:265104388..265107839
Molecular Weight (calculated)
11722.1 Da
IEP (calculated)
8.225
GRAVY (calculated)
0.141
Length
111 amino acids
Sequence
(BLAST)
(BLAST)
001: MSWPVGTNGV VATASSSPSA VVAAALGSGG ERQVASDMPA MMVQEMPLVW TIGLPNGRRA VGWLYEYSKV DDVRIKCVCH GSFFNPAQFV EHAGGGQVAN
101: SLRSILVKPP Y
101: SLRSILVKPP Y
001: MSKKQRLSEE DGEVEIELDL GLSLNGRFGV DPLAKTRLMR STSVLDLVVN DRSGLSRTCS LPVETEEEWR KRKELQSLRR LEAKRKRSEK QRKHKACGGE
101: EKVVEEGSIG SSGSGSSGLS EVDTLLPPVQ ATTNKSVETS PSSAQSQPEN LGKEASQNII EDMPFVSTTG DGPNGKKING FLYRYRKGEE VRIVCVCHGS
201: FLSPAEFVKH AGGGDVAHPL KHIVVNPSPF L
101: EKVVEEGSIG SSGSGSSGLS EVDTLLPPVQ ATTNKSVETS PSSAQSQPEN LGKEASQNII EDMPFVSTTG DGPNGKKING FLYRYRKGEE VRIVCVCHGS
201: FLSPAEFVKH AGGGDVAHPL KHIVVNPSPF L
Arabidopsis Description
AFP3Ninja-family protein AFP3 [Source:UniProtKB/Swiss-Prot;Acc:Q94F39]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.