CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH54707	Soybean	nucleus	51.15	53.41
GSMUA_Achr4P32830_001	Banana	nucleus	19.23	36.76
KRH56804	Soybean	nucleus	34.62	31.91
HORVU4Hr1G035770.1	Barley	plastid	13.46	31.53
Solyc02g032140.1.1	Tomato	cytosol	15.0	31.45
KRH03141	Soybean	nucleus	26.15	28.94
TraesCS3D01G532000.1	Wheat	nucleus	16.92	25.88
GSMUA_Achr9P09330_001	Banana	nucleus	29.62	22.78
TraesCS4D01G246100.2	Wheat	nucleus	21.92	22.71
TraesCS3B01G594200.1	Wheat	cytosol	19.62	22.57
TraesCS4B01G246800.1	Wheat	nucleus	20.77	22.31
TraesCS4A01G058100.1	Wheat	nucleus	20.38	21.54
GSMUA_Achr5P01470_001	Banana	nucleus	23.08	20.91
KRH01286	Soybean	nucleus	29.23	20.16
GSMUA_Achr6P34980_001	Banana	cytosol	21.54	19.79
KRH70923	Soybean	nucleus	30.77	19.46
KRH75067	Soybean	nucleus	29.62	18.92
KRH45047	Soybean	nucleus	27.31	18.54
TraesCS4D01G246400.1	Wheat	nucleus	26.92	17.68
HORVU4Hr1G067930.1	Barley	nucleus	27.31	17.57
TraesCS4B01G247000.1	Wheat	nucleus	26.15	17.17
Zm00001d048085_P002	Maize	nucleus	25.38	16.79
Os03t0214200-01	Rice	nucleus	25.38	16.46
EER89528	Sorghum	nucleus	22.31	16.25
EER92642	Sorghum	nucleus	24.62	16.24
KRH07456	Soybean	nucleus	21.54	16.0
KRH66123	Soybean	nucleus	20.0	14.69
VIT_17s0000g05280.t01	Wine grape	nucleus	23.85	14.52
PGSC0003DMT400091590	Potato	cytosol	21.54	13.73
TraesCS4A01G057800.1	Wheat	cytosol, mitochondrion, nucleus, plastid	26.92	13.7

Protein Annotations

EMBL:ACUP02002644	EnsemblPlants:KRH63223	EnsemblPlantsGene:GLYMA_04G162100	EntrezGene:100788995	GO:GO:0007154	GO:GO:0007165
GO:GO:0008150	GO:GO:0009987	InterPro:Jas	InterPro:Ninja_fam	PANTHER:PTHR31413	PANTHER:PTHR31413:SF10
PFAM:PF16135	ProteinID:KRH63223	ProteinID:KRH63223.1	ProteinID:KRH63224.1	SEG:seg	UniParc:UPI0003DEB404
UniProt:A0A0R0KF87	MapMan:15.5.53.3	:	:	:	:

Description

hypothetical protein

Coordinates

chr4:+:40205706..40210683

Molecular Weight (calculated)

28081.5 Da

IEP (calculated)

9.848

GRAVY (calculated)

-0.486

Length

260 amino acids

Sequence
(BLAST)

001: MERCYNEKEY KSNKTDLTLK LPPCGENVAE ERGLRRSSSS SLVVGVANAA QWGPSLGRSC SLPTERQRRR VAALSPQVLA WVAASSAVNV NNTPSSLLKP
101: KALPNSSQDS GLDTLRGVSY NIPYIGPTHS AEGVASNIQT STKQENDSMA SQKTMAKGIS PRPADTKPEN PAKKHKLGNY CSLKGDVMEI LRRMPSVTTT
201: GDGPNGKRIE GFLYKYRSGQ VCIVCVCHGN FLTPAEFVMH AGGKEVANPM KHITVLSNSF

Best Arabidopsis Sequence Match ( AT3G29575.1 )
(BLAST)

001: MSKKQRLSEE DGEVEIELDL GLSLNGRFGV DPLAKTRLMR STSVLDLVVN DRSGLSRTCS LPVETEEEWR KRKELQSLRR LEAKRKRSEK QRKHKACGGE
101: EKVVEEGSIG SSGSGSSGLS EVDTLLPPVQ ATTNKSVETS PSSAQSQPEN LGKEASQNII EDMPFVSTTG DGPNGKKING FLYRYRKGEE VRIVCVCHGS
201: FLSPAEFVKH AGGGDVAHPL KHIVVNPSPF L

Arabidopsis Description

AFP3Ninja-family protein AFP3 [Source:UniProtKB/Swiss-Prot;Acc:Q94F39]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.