Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH75067 | Soybean | nucleus | 71.29 | 71.99 |
| GSMUA_Achr4P32830_001 | Banana | nucleus | 18.0 | 54.41 |
| VIT_01s0011g00410.t01 | Wine grape | nucleus | 45.5 | 51.94 |
| Bra026891.1-P | Field mustard | nucleus | 36.25 | 48.22 |
| CDY33807 | Canola | nucleus | 36.25 | 48.22 |
| CDY16104 | Canola | nucleus | 35.77 | 47.57 |
| CDY36406 | Canola | nucleus | 32.6 | 45.89 |
| Bra019706.1-P | Field mustard | nucleus | 33.82 | 43.99 |
| CDX98125 | Canola | nucleus | 33.82 | 43.57 |
| Bra004368.1-P | Field mustard | nucleus | 34.06 | 42.94 |
| AT1G69260.1 | Thale cress | nucleus | 35.04 | 41.74 |
| AT1G13740.1 | Thale cress | nucleus | 35.28 | 41.67 |
| CDX95951 | Canola | nucleus | 34.06 | 41.67 |
| Bra004004.1-P | Field mustard | nucleus | 34.79 | 41.33 |
| CDY07354 | Canola | nucleus | 34.79 | 41.21 |
| CDY04272 | Canola | nucleus | 34.55 | 41.04 |
| GSMUA_Achr9P09330_001 | Banana | nucleus | 33.09 | 40.24 |
| CDY40905 | Canola | nucleus | 32.6 | 38.4 |
| PGSC0003DMT400072760 | Potato | nucleus | 38.2 | 38.2 |
| PGSC0003DMT400045906 | Potato | nucleus | 36.01 | 38.14 |
| GSMUA_Achr5P01470_001 | Banana | nucleus | 26.52 | 37.98 |
| GSMUA_Achr6P34980_001 | Banana | cytosol | 25.55 | 37.1 |
| Solyc04g005380.2.1 | Tomato | nucleus | 34.06 | 36.46 |
| KRH01286 | Soybean | nucleus | 33.09 | 36.07 |
| HORVU4Hr1G035770.1 | Barley | plastid | 9.73 | 36.04 |
| KRH45047 | Soybean | nucleus | 32.6 | 34.99 |
| Solyc05g012210.2.1 | Tomato | extracellular, golgi | 37.23 | 33.05 |
| EER89528 | Sorghum | nucleus | 27.25 | 31.37 |
| KRH54707 | Soybean | nucleus | 18.98 | 31.33 |
| KRH63223 | Soybean | nucleus | 19.46 | 30.77 |
| Os03t0214200-01 | Rice | nucleus | 29.44 | 30.17 |
| TraesCS4B01G246800.1 | Wheat | nucleus | 17.76 | 30.17 |
| Zm00001d048085_P002 | Maize | nucleus | 28.47 | 29.77 |
| EER92642 | Sorghum | nucleus | 28.47 | 29.7 |
| TraesCS3B01G594200.1 | Wheat | cytosol | 16.3 | 29.65 |
| TraesCS3D01G532000.1 | Wheat | nucleus | 12.17 | 29.41 |
| TraesCS4D01G246100.2 | Wheat | nucleus | 17.52 | 28.69 |
| TraesCS4A01G058100.1 | Wheat | nucleus | 17.03 | 28.46 |
| TraesCS4D01G246400.1 | Wheat | nucleus | 25.55 | 26.52 |
| TraesCS4B01G247000.1 | Wheat | nucleus | 25.3 | 26.26 |
| KRH07456 | Soybean | nucleus | 22.14 | 26.0 |
| HORVU4Hr1G067930.1 | Barley | nucleus | 25.3 | 25.74 |
| KRH66123 | Soybean | nucleus | 22.14 | 25.71 |
| KRH56804 | Soybean | nucleus | 16.55 | 24.11 |
| KRH03141 | Soybean | nucleus | 13.14 | 22.98 |
| TraesCS4A01G057800.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 26.52 | 21.33 |
Protein Annotations
| EntrezGene:100812680 | MapMan:15.5.53.3 | EMBL:ACUP02000827 | ncoils:Coil | EnsemblPlantsGene:GLYMA_02G118500 | GO:GO:0007154 |
| GO:GO:0007165 | GO:GO:0008150 | GO:GO:0009987 | UniProt:I1JEF6 | InterPro:Jas | EnsemblPlants:KRH70923 |
| ProteinID:KRH70923 | ProteinID:KRH70923.1 | InterPro:NINJA_B | InterPro:Ninja_fam | InterPro:Ninja_motif | PFAM:PF07897 |
| PFAM:PF16135 | PFAM:PF16136 | PANTHER:PTHR31413 | PANTHER:PTHR31413:SF6 | UniParc:UPI0002337991 | SEG:seg |
Description
hypothetical protein
Coordinates
chr2:+:11677001..11682244
Molecular Weight (calculated)
45113.7 Da
IEP (calculated)
7.786
GRAVY (calculated)
-0.916
Length
411 amino acids
Sequence
(BLAST)
(BLAST)
001: MEDYKNRHSY QQQQQKQEEE EEEKKVVCEK MERYPRDLLQ GFSLSGVTTV RDGNNNNNNI NNNMMHQHHH HHVLHHHHEQ QQQQHEVDDE EVELNLGLSL
101: GGRFGVDKNA KKKKLLRSSS VVGTMPLFRE DDAVAPSAAA FPALMRTSSL PTETEEEWRR RKEMQTLRRM EAKRRRSEKQ RGSREVAGAG EEVEAGRSVA
201: MGFNKFGSSA EAAVPPPPGW GVPGKQVVLG DVMGKGKGFQ GLFGQPSSHG SADSQGGSSS SLSEMDSKAF LGSSSCGEAK SPISNISAQE QSSQDPAGSG
301: GKTNENVTRT SKADQGENPS RKHHPSQKTM GRHIGTNSME DMPCVFTKGD GPNGRRIEGI LYKYGKGEEV RIMCVCHGNF LSPAEFVKHA GGGDVAHPLR
401: HIVVNPSAAP F
101: GGRFGVDKNA KKKKLLRSSS VVGTMPLFRE DDAVAPSAAA FPALMRTSSL PTETEEEWRR RKEMQTLRRM EAKRRRSEKQ RGSREVAGAG EEVEAGRSVA
201: MGFNKFGSSA EAAVPPPPGW GVPGKQVVLG DVMGKGKGFQ GLFGQPSSHG SADSQGGSSS SLSEMDSKAF LGSSSCGEAK SPISNISAQE QSSQDPAGSG
301: GKTNENVTRT SKADQGENPS RKHHPSQKTM GRHIGTNSME DMPCVFTKGD GPNGRRIEGI LYKYGKGEEV RIMCVCHGNF LSPAEFVKHA GGGDVAHPLR
401: HIVVNPSAAP F
001: MGEASRQQRA WNREMTVTTN LSLDIDKYPR DLLRGFMSEN GGGRVFHGGE TNCDDESTIE LNLGLSLGGR FGVDKTPRKL KRSSSVLDTV PFNDSTVAEP
101: ENYTVGLERT TSLPAEMEEE WRKRKEMQSL RRMEAKRRRC EKQSFRVGNS DDQTVSFENE RWVTASKSGF LQRHLVSSNR QVCGVDSDGG GATGGGSSSS
201: LSELDNKNQQ GSSNSCNDER SPKIVAGCSS NSGSQGTERP SVTRANKVNE NENEKRVRSE DSVDRKGKGM ATSTGLVDMP CVFTKGDGPN GRRVDGILYK
301: YGKGEEVRIM CICHGSFLTP AEFVKHGGGG DVDRPLRHIV VNTSSSTF
101: ENYTVGLERT TSLPAEMEEE WRKRKEMQSL RRMEAKRRRC EKQSFRVGNS DDQTVSFENE RWVTASKSGF LQRHLVSSNR QVCGVDSDGG GATGGGSSSS
201: LSELDNKNQQ GSSNSCNDER SPKIVAGCSS NSGSQGTERP SVTRANKVNE NENEKRVRSE DSVDRKGKGM ATSTGLVDMP CVFTKGDGPN GRRVDGILYK
301: YGKGEEVRIM CICHGSFLTP AEFVKHGGGG DVDRPLRHIV VNTSSSTF
Arabidopsis Description
AFP2AFP2 [Source:UniProtKB/TrEMBL;Acc:A0A178WBB1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.