Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH70923 | Soybean | nucleus | 71.99 | 71.29 |
| GSMUA_Achr4P32830_001 | Banana | nucleus | 18.18 | 54.41 |
| VIT_01s0011g00410.t01 | Wine grape | nucleus | 46.44 | 52.5 |
| Bra026891.1-P | Field mustard | nucleus | 36.61 | 48.22 |
| CDY33807 | Canola | nucleus | 36.61 | 48.22 |
| CDY16104 | Canola | nucleus | 35.63 | 46.93 |
| CDY36406 | Canola | nucleus | 32.43 | 45.21 |
| Bra019706.1-P | Field mustard | nucleus | 33.42 | 43.04 |
| CDX98125 | Canola | nucleus | 33.42 | 42.63 |
| AT1G13740.1 | Thale cress | nucleus | 36.12 | 42.24 |
| AT1G69260.1 | Thale cress | nucleus | 35.38 | 41.74 |
| Bra004368.1-P | Field mustard | nucleus | 32.92 | 41.1 |
| Bra004004.1-P | Field mustard | nucleus | 34.89 | 41.04 |
| CDY07354 | Canola | nucleus | 34.89 | 40.92 |
| CDY04272 | Canola | nucleus | 34.64 | 40.75 |
| GSMUA_Achr9P09330_001 | Banana | nucleus | 33.17 | 39.94 |
| CDX95951 | Canola | nucleus | 32.92 | 39.88 |
| PGSC0003DMT400045906 | Potato | nucleus | 36.85 | 38.66 |
| PGSC0003DMT400072760 | Potato | nucleus | 38.33 | 37.96 |
| CDY40905 | Canola | nucleus | 32.43 | 37.82 |
| GSMUA_Achr5P01470_001 | Banana | nucleus | 26.29 | 37.28 |
| Solyc04g005380.2.1 | Tomato | nucleus | 34.4 | 36.46 |
| KRH01286 | Soybean | nucleus | 33.42 | 36.07 |
| GSMUA_Achr6P34980_001 | Banana | cytosol | 25.06 | 36.04 |
| HORVU4Hr1G035770.1 | Barley | plastid | 9.83 | 36.04 |
| KRH45047 | Soybean | nucleus | 32.19 | 34.2 |
| Solyc05g012210.2.1 | Tomato | extracellular, golgi | 37.1 | 32.61 |
| EER89528 | Sorghum | nucleus | 27.27 | 31.09 |
| TraesCS4B01G246800.1 | Wheat | nucleus | 18.43 | 30.99 |
| KRH54707 | Soybean | nucleus | 18.92 | 30.92 |
| Os03t0214200-01 | Rice | nucleus | 29.48 | 29.93 |
| KRH63223 | Soybean | nucleus | 18.92 | 29.62 |
| Zm00001d048085_P002 | Maize | nucleus | 28.5 | 29.52 |
| EER92642 | Sorghum | nucleus | 28.5 | 29.44 |
| TraesCS3D01G532000.1 | Wheat | nucleus | 12.29 | 29.41 |
| TraesCS3B01G594200.1 | Wheat | cytosol | 16.22 | 29.2 |
| TraesCS4A01G058100.1 | Wheat | nucleus | 17.2 | 28.46 |
| TraesCS4D01G246400.1 | Wheat | nucleus | 26.29 | 27.02 |
| HORVU4Hr1G067930.1 | Barley | nucleus | 26.78 | 26.98 |
| TraesCS4B01G247000.1 | Wheat | nucleus | 26.04 | 26.77 |
| TraesCS4D01G246100.2 | Wheat | nucleus | 16.22 | 26.29 |
| KRH66123 | Soybean | nucleus | 22.85 | 26.27 |
| KRH07456 | Soybean | nucleus | 20.88 | 24.29 |
| KRH56804 | Soybean | nucleus | 16.71 | 24.11 |
| TraesCS4A01G057800.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 27.27 | 21.72 |
| KRH03141 | Soybean | nucleus | 12.53 | 21.7 |
Protein Annotations
| EntrezGene:100776452 | MapMan:15.5.53.3 | EMBL:ACUP02000112 | ncoils:Coil | EnsemblPlantsGene:GLYMA_01G060300 | GO:GO:0007154 |
| GO:GO:0007165 | GO:GO:0008150 | GO:GO:0009987 | UniProt:I1J610 | InterPro:Jas | EnsemblPlants:KRH75067 |
| ProteinID:KRH75067 | ProteinID:KRH75067.1 | InterPro:NINJA_B | InterPro:Ninja_fam | InterPro:Ninja_motif | PFAM:PF07897 |
| PFAM:PF16135 | PFAM:PF16136 | PANTHER:PTHR31413 | PANTHER:PTHR31413:SF6 | UniParc:UPI0002336D8A | SEG:seg |
Description
hypothetical protein
Coordinates
chr1:+:8127582..8132640
Molecular Weight (calculated)
44861.6 Da
IEP (calculated)
7.717
GRAVY (calculated)
-0.876
Length
407 amino acids
Sequence
(BLAST)
(BLAST)
001: MEDYKKNHPY QQQQQHQHQQ EEEKEVVCEK MERYPRDLLQ GFSISGVATI RDDNNKINNN NMMQQQHHVL HHHHEQQQQQ EQHEEDDEEV ELNLGLSLGG
101: RFGVDKNAKK KRLLRSSSVV GTMPLFRQDD AVAPSAAAFP ALMRTSSLPT ETEEEWRRRK EMQTLRRMEA KRRRSEKQRG SREVFAGAGE EVEAGGTMAM
201: GFNKFGSSAV AVPPPGWGVP AKQVVLGDVL GKGRGFQGLF GQPSSQGSAD SQGGSSSSMS EMDSKAFLGS SSCGEAKSPV SNQSMQERSS QDPAGSGGKM
301: NENVTRTSKA EAENPSRKPH PAQKITGRHI GTNSMEDMPC VFTKGDGPNG RRIEGILYKY GKGEEVRIMC VCHGNFLSPA EFVKHAGGGD VAYPLRHIVV
401: NPSAAPF
101: RFGVDKNAKK KRLLRSSSVV GTMPLFRQDD AVAPSAAAFP ALMRTSSLPT ETEEEWRRRK EMQTLRRMEA KRRRSEKQRG SREVFAGAGE EVEAGGTMAM
201: GFNKFGSSAV AVPPPGWGVP AKQVVLGDVL GKGRGFQGLF GQPSSQGSAD SQGGSSSSMS EMDSKAFLGS SSCGEAKSPV SNQSMQERSS QDPAGSGGKM
301: NENVTRTSKA EAENPSRKPH PAQKITGRHI GTNSMEDMPC VFTKGDGPNG RRIEGILYKY GKGEEVRIMC VCHGNFLSPA EFVKHAGGGD VAYPLRHIVV
401: NPSAAPF
001: MGEASRQQRA WNREMTVTTN LSLDIDKYPR DLLRGFMSEN GGGRVFHGGE TNCDDESTIE LNLGLSLGGR FGVDKTPRKL KRSSSVLDTV PFNDSTVAEP
101: ENYTVGLERT TSLPAEMEEE WRKRKEMQSL RRMEAKRRRC EKQSFRVGNS DDQTVSFENE RWVTASKSGF LQRHLVSSNR QVCGVDSDGG GATGGGSSSS
201: LSELDNKNQQ GSSNSCNDER SPKIVAGCSS NSGSQGTERP SVTRANKVNE NENEKRVRSE DSVDRKGKGM ATSTGLVDMP CVFTKGDGPN GRRVDGILYK
301: YGKGEEVRIM CICHGSFLTP AEFVKHGGGG DVDRPLRHIV VNTSSSTF
101: ENYTVGLERT TSLPAEMEEE WRKRKEMQSL RRMEAKRRRC EKQSFRVGNS DDQTVSFENE RWVTASKSGF LQRHLVSSNR QVCGVDSDGG GATGGGSSSS
201: LSELDNKNQQ GSSNSCNDER SPKIVAGCSS NSGSQGTERP SVTRANKVNE NENEKRVRSE DSVDRKGKGM ATSTGLVDMP CVFTKGDGPN GRRVDGILYK
301: YGKGEEVRIM CICHGSFLTP AEFVKHGGGG DVDRPLRHIV VNTSSSTF
Arabidopsis Description
AFP2AFP2 [Source:UniProtKB/TrEMBL;Acc:A0A178WBB1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.