Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4B01G246800.1 | Wheat | nucleus | 71.14 | 72.31 |
| TraesCS4D01G246100.2 | Wheat | nucleus | 67.07 | 65.74 |
| Solyc02g066850.1.1 | Tomato | cytosol | 14.63 | 54.55 |
| Bra027018.1-P | Field mustard | cytosol | 11.79 | 49.15 |
| HORVU4Hr1G035770.1 | Barley | plastid | 21.14 | 46.85 |
| Solyc06g083290.1.1 | Tomato | cytosol, extracellular, plastid | 12.2 | 44.12 |
| PGSC0003DMT400036544 | Potato | cytosol | 15.85 | 30.71 |
| Solyc02g032680.1.1 | Tomato | cytosol | 13.82 | 28.33 |
| Solyc02g032710.1.1 | Tomato | cytosol | 15.45 | 28.15 |
| PGSC0003DMT400089614 | Potato | cytosol | 15.45 | 27.94 |
| AT3G29575.1 | Thale cress | nucleus | 25.61 | 27.27 |
| Solyc02g066860.1.1 | Tomato | cytosol | 14.23 | 26.92 |
| Solyc02g032140.1.1 | Tomato | cytosol | 13.41 | 26.61 |
| PGSC0003DMT400095238 | Potato | cytosol, mitochondrion | 13.01 | 25.2 |
| CDY00093 | Canola | nucleus | 26.02 | 25.2 |
| CDY44386 | Canola | nucleus | 25.61 | 25.1 |
| CDY19988 | Canola | nucleus | 26.02 | 25.1 |
| Bra036210.1-P | Field mustard | nucleus | 26.02 | 25.1 |
| Solyc02g030610.1.1 | Tomato | cytosol | 15.85 | 24.38 |
| Solyc02g066870.1.1 | Tomato | cytosol | 15.45 | 24.2 |
| CDY04085 | Canola | nucleus | 24.39 | 24.1 |
| Solyc02g030650.1.1 | Tomato | nucleus | 17.07 | 23.33 |
| TraesCS2A01G176300.1 | Wheat | nucleus | 29.27 | 22.86 |
| GSMUA_Achr3P30390_001 | Banana | nucleus | 30.49 | 22.66 |
| CDX86364 | Canola | nucleus | 24.39 | 22.47 |
| Bra025400.1-P | Field mustard | nucleus | 24.39 | 22.47 |
| CDX85274 | Canola | nucleus | 23.98 | 22.26 |
| CDY36406 | Canola | nucleus | 26.02 | 21.92 |
| CDY43256 | Canola | mitochondrion | 24.8 | 21.79 |
| Bra039157.1-P | Field mustard | cytosol | 24.39 | 21.66 |
| CDX74273 | Canola | mitochondrion | 23.98 | 21.61 |
| CDX91976 | Canola | mitochondrion | 24.8 | 21.4 |
| CDY68672 | Canola | cytosol, mitochondrion, nucleus, plastid | 23.98 | 21.38 |
| CDY16104 | Canola | nucleus | 26.42 | 21.04 |
| GSMUA_Achr7P26660_001 | Banana | nucleus | 30.08 | 20.96 |
| Zm00001d048085_P002 | Maize | nucleus | 33.33 | 20.87 |
| Bra004004.1-P | Field mustard | nucleus | 29.27 | 20.81 |
| CDY33807 | Canola | nucleus | 26.02 | 20.71 |
| Bra026891.1-P | Field mustard | nucleus | 26.02 | 20.71 |
| GSMUA_Achr4P14370_001 | Banana | nucleus | 28.05 | 20.6 |
| Bra001031.1-P | Field mustard | mitochondrion | 22.76 | 20.51 |
| KRH63223 | Soybean | nucleus | 21.54 | 20.38 |
| CDY07354 | Canola | nucleus | 28.46 | 20.17 |
| KRH54707 | Soybean | nucleus | 20.33 | 20.08 |
| PGSC0003DMT400003712 | Potato | nucleus | 25.61 | 20.06 |
| Bra019706.1-P | Field mustard | nucleus | 25.2 | 19.62 |
| EER92642 | Sorghum | nucleus | 31.3 | 19.54 |
| CDX98125 | Canola | nucleus | 25.2 | 19.44 |
| CDY04272 | Canola | nucleus | 27.24 | 19.36 |
| EER89528 | Sorghum | nucleus | 28.05 | 19.33 |
| Solyc02g088910.2.1 | Tomato | nucleus | 24.8 | 19.24 |
| Os03t0214200-01 | Rice | nucleus | 31.3 | 19.2 |
| AT3G07255.1 | Thale cress | nucleus | 22.76 | 19.11 |
| AT1G13740.1 | Thale cress | nucleus | 26.83 | 18.97 |
| AT1G69260.1 | Thale cress | nucleus | 26.42 | 18.84 |
| VIT_01s0011g00410.t01 | Wine grape | nucleus | 27.24 | 18.61 |
| KRH56804 | Soybean | nucleus | 21.14 | 18.44 |
| Bra033105.1-P | Field mustard | nucleus | 16.26 | 18.35 |
| Solyc01g058740.2.1 | Tomato | cytosol | 5.28 | 18.31 |
| PGSC0003DMT400045906 | Potato | nucleus | 28.86 | 18.3 |
| CDY34910 | Canola | peroxisome | 20.73 | 18.28 |
| AT3G02140.1 | Thale cress | cytosol | 23.58 | 18.18 |
| Bra001242.1-P | Field mustard | nucleus | 21.14 | 18.06 |
| CDX74054 | Canola | nucleus | 21.14 | 18.06 |
| GSMUA_Achr6P27430_001 | Banana | nucleus | 26.02 | 18.03 |
| Solyc04g005380.2.1 | Tomato | nucleus | 28.05 | 17.97 |
| Solyc02g032670.1.1 | Tomato | cytosol | 19.11 | 17.94 |
| Bra040367.1-P | Field mustard | nucleus | 20.33 | 17.92 |
| Solyc02g032690.1.1 | Tomato | cytosol | 17.48 | 17.92 |
| KRH03141 | Soybean | nucleus | 17.07 | 17.87 |
| CDY08008 | Canola | cytosol | 20.73 | 17.77 |
| TraesCS4A01G057800.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 36.59 | 17.61 |
| PGSC0003DMT400072760 | Potato | nucleus | 29.27 | 17.52 |
| GSMUA_Achr3P15940_001 | Banana | nucleus | 24.8 | 17.48 |
| KRH75067 | Soybean | nucleus | 28.46 | 17.2 |
| Bra004368.1-P | Field mustard | nucleus | 22.76 | 17.18 |
| KRH70923 | Soybean | nucleus | 28.46 | 17.03 |
| KRH01286 | Soybean | nucleus | 26.02 | 16.98 |
| CDX95951 | Canola | nucleus | 23.17 | 16.96 |
| CDY40905 | Canola | nucleus | 23.58 | 16.62 |
| VIT_14s0068g00300.t01 | Wine grape | nucleus | 26.02 | 16.54 |
| Solyc02g030620.1.1 | Tomato | cytosol | 19.11 | 15.88 |
| Solyc02g066900.1.1 | Tomato | cytosol | 20.33 | 15.77 |
| Solyc02g030630.1.1 | Tomato | cytosol | 19.51 | 15.69 |
| KRH45047 | Soybean | nucleus | 24.39 | 15.67 |
| VIT_00s0216g00060.t01 | Wine grape | nucleus | 22.76 | 15.64 |
| PGSC0003DMT400051959 | Potato | nucleus | 16.26 | 15.56 |
| Solyc05g012210.2.1 | Tomato | extracellular, golgi | 28.86 | 15.33 |
| KRH66123 | Soybean | nucleus | 21.95 | 15.25 |
| KRH07456 | Soybean | nucleus | 21.14 | 14.86 |
| Solyc02g066890.1.1 | Tomato | cytosol | 20.73 | 14.21 |
| GSMUA_Achr9P07070_001 | Banana | mitochondrion | 24.39 | 14.08 |
| Solyc02g032720.1.1 | Tomato | cytosol | 20.73 | 13.78 |
| PGSC0003DMT400091590 | Potato | cytosol | 19.51 | 11.76 |
| VIT_17s0000g05280.t01 | Wine grape | nucleus | 19.51 | 11.24 |
| Solyc02g066840.1.1 | Tomato | cytosol | 6.5 | 10.67 |
| PGSC0003DMT400036545 | Potato | nucleus | 19.11 | 9.61 |
| Solyc02g030600.1.1 | Tomato | cytosol | 6.5 | 7.66 |
Protein Annotations
| EnsemblPlants:TraesCS4A01G058100.1 | EnsemblPlantsGene:TraesCS4A01G058100 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0009987 |
| InterPro:Jas | InterPro:Ninja_fam | PANTHER:PTHR31413 | PFAM:PF16135 | SEG:seg | MapMan:15.5.53.3 |
Description
No Description!
Coordinates
chr4A:-:48891591..48902835
Molecular Weight (calculated)
25179.1 Da
IEP (calculated)
9.938
GRAVY (calculated)
-0.109
Length
246 amino acids
Sequence
(BLAST)
(BLAST)
001: MDAYSKDSLR GVGGGDDGEK KVKRSESGTE EVDLTLGLSL GGRLGAKRRR LEGHAGSSSA APAPPAPVGT NSSQGTGFPP NGVAVEPSAL LRATLNPFPG
101: SAGAAGVQPS ATPLISSIKQ EPVEGTARAD GGSLSSAVVP RSVGTNGVMP TTSSLASAVM MAAILGTRGA SQRALAREMP LVWTSGLHNG MRTVGFLYQY
201: SRVDELRIMC VCHGSFLTPA EFVEHAGGGR VANPLRSIIV KTPSWL
101: SAGAAGVQPS ATPLISSIKQ EPVEGTARAD GGSLSSAVVP RSVGTNGVMP TTSSLASAVM MAAILGTRGA SQRALAREMP LVWTSGLHNG MRTVGFLYQY
201: SRVDELRIMC VCHGSFLTPA EFVEHAGGGR VANPLRSIIV KTPSWL
001: MGEASRQQRA WNREMTVTTN LSLDIDKYPR DLLRGFMSEN GGGRVFHGGE TNCDDESTIE LNLGLSLGGR FGVDKTPRKL KRSSSVLDTV PFNDSTVAEP
101: ENYTVGLERT TSLPAEMEEE WRKRKEMQSL RRMEAKRRRC EKQSFRVGNS DDQTVSFENE RWVTASKSGF LQRHLVSSNR QVCGVDSDGG GATGGGSSSS
201: LSELDNKNQQ GSSNSCNDER SPKIVAGCSS NSGSQGTERP SVTRANKVNE NENEKRVRSE DSVDRKGKGM ATSTGLVDMP CVFTKGDGPN GRRVDGILYK
301: YGKGEEVRIM CICHGSFLTP AEFVKHGGGG DVDRPLRHIV VNTSSSTF
101: ENYTVGLERT TSLPAEMEEE WRKRKEMQSL RRMEAKRRRC EKQSFRVGNS DDQTVSFENE RWVTASKSGF LQRHLVSSNR QVCGVDSDGG GATGGGSSSS
201: LSELDNKNQQ GSSNSCNDER SPKIVAGCSS NSGSQGTERP SVTRANKVNE NENEKRVRSE DSVDRKGKGM ATSTGLVDMP CVFTKGDGPN GRRVDGILYK
301: YGKGEEVRIM CICHGSFLTP AEFVKHGGGG DVDRPLRHIV VNTSSSTF
Arabidopsis Description
AFP2AFP2 [Source:UniProtKB/TrEMBL;Acc:A0A178WBB1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.