Factsheet for VIT_14s0068g00300.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_01s0011g00410.t01
VIT_06s0080g00340.t01
VIT_14s0068g00300.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G02140.1	VIT_01s0011g00410.t01	AT1G13740.1	18484180
AT3G02140.1	VIT_01s0011g00410.t01	AT1G69260.1	18484180
AT3G02140.1	VIT_14s0068g00300.t01	AT3G02140.1	18484180
AT3G02140.1	VIT_06s0080g00340.t01	AT3G44460.1	18484180
AT3G29575.1	VIT_01s0011g00410.t01	AT1G13740.1	18484180
AT3G29575.1	VIT_01s0011g00410.t01	AT1G69260.1	18484180
AT3G29575.1	VIT_14s0068g00300.t01	AT3G29575.1	18484180
AT3G29575.1	VIT_06s0080g00340.t01	AT3G44460.1	18484180

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g066850.1.1	Tomato	cytosol	11.63	68.18
AT3G29575.1	Thale cress	nucleus	33.59	56.28
CDY19988	Canola	nucleus	36.18	54.9
Bra036210.1-P	Field mustard	nucleus	36.18	54.9
GSMUA_Achr4P32830_001	Banana	nucleus	19.12	54.41
CDY00093	Canola	nucleus	35.66	54.33
CDY04085	Canola	nucleus	33.85	52.61
CDY44386	Canola	nucleus	34.11	52.59
CDX86364	Canola	nucleus	35.66	51.69
Bra025400.1-P	Field mustard	nucleus	35.66	51.69
CDX85274	Canola	nucleus	34.88	50.94
Bra033105.1-P	Field mustard	nucleus	27.13	48.17
Solyc02g088910.2.1	Tomato	nucleus	37.47	45.74
PGSC0003DMT400003712	Potato	nucleus	36.43	44.9
PGSC0003DMT400036544	Potato	cytosol	13.7	41.73
GSMUA_Achr9P09330_001	Banana	nucleus	35.66	40.83
VIT_01s0011g00410.t01	Wine grape	nucleus	37.21	40.0
KRH01286	Soybean	nucleus	36.69	37.67
HORVU4Hr1G035770.1	Barley	plastid	10.59	36.94
KRH45047	Soybean	nucleus	36.43	36.81
GSMUA_Achr5P01470_001	Banana	nucleus	27.13	36.59
GSMUA_Achr6P34980_001	Banana	cytosol	26.61	36.4
CDX74273	Canola	mitochondrion	25.58	36.26
Bra039157.1-P	Field mustard	cytosol	25.84	36.1
Solyc02g032680.1.1	Tomato	cytosol	11.11	35.83
CDY68672	Canola	cytosol, mitochondrion, nucleus, plastid	25.32	35.51
CDX91976	Canola	mitochondrion	25.84	35.09
Bra001031.1-P	Field mustard	mitochondrion	24.55	34.8
Solyc02g066860.1.1	Tomato	cytosol	11.63	34.62
Solyc02g032710.1.1	Tomato	cytosol	11.89	34.07
PGSC0003DMT400089614	Potato	cytosol	11.89	33.82
Solyc02g032690.1.1	Tomato	cytosol	20.93	33.75
CDY43256	Canola	mitochondrion	24.29	33.57
Solyc02g030610.1.1	Tomato	cytosol	13.7	33.12
PGSC0003DMT400095238	Potato	cytosol, mitochondrion	10.85	33.07
Solyc02g066870.1.1	Tomato	cytosol	12.92	31.85
Solyc02g030650.1.1	Tomato	nucleus	14.21	30.56
TraesCS3D01G532000.1	Wheat	nucleus	12.92	29.41
AT3G02140.1	Thale cress	cytosol	23.77	28.84
Solyc02g032670.1.1	Tomato	cytosol	19.38	28.63
TraesCS3B01G594200.1	Wheat	cytosol	16.28	27.88
TraesCS4B01G246800.1	Wheat	nucleus	17.31	27.69
Zm00001d048085_P002	Maize	nucleus	27.91	27.48
Os03t0214200-01	Rice	nucleus	28.42	27.43
Solyc02g030620.1.1	Tomato	cytosol	20.93	27.36
Solyc02g030630.1.1	Tomato	cytosol	21.45	27.12
EER92642	Sorghum	nucleus	27.39	26.9
EER89528	Sorghum	nucleus	24.81	26.89
Solyc01g058740.2.1	Tomato	cytosol	4.91	26.76
TraesCS4A01G058100.1	Wheat	nucleus	16.54	26.02
TraesCS4D01G246100.2	Wheat	nucleus	16.28	25.1
TraesCS4D01G246400.1	Wheat	nucleus	25.06	24.49
Solyc02g066900.1.1	Tomato	cytosol	19.9	24.29
TraesCS4B01G247000.1	Wheat	nucleus	24.55	23.99
HORVU4Hr1G067930.1	Barley	nucleus	24.55	23.51
Solyc02g066890.1.1	Tomato	cytosol	21.19	22.84
Solyc02g066840.1.1	Tomato	cytosol	8.27	21.33
VIT_00s0216g00060.t01	Wine grape	nucleus	18.86	20.39
TraesCS4A01G057800.1	Wheat	cytosol, mitochondrion, nucleus, plastid	26.1	19.77
Solyc02g032720.1.1	Tomato	cytosol	18.86	19.73
PGSC0003DMT400036545	Potato	nucleus	21.19	16.77
Solyc02g030600.1.1	Tomato	cytosol	8.27	15.31
VIT_17s0000g05280.t01	Wine grape	nucleus	16.54	14.99

Protein Annotations

EntrezGene:100253142	wikigene:100253142	MapMan:15.5.53.3	EMBL:AM484412	ProteinID:CAN77669	ProteinID:CAN77669.1
ProteinID:CCB46932	ProteinID:CCB46932.1	ncoils:Coil	UniProt:F6H490	EMBL:FN595232	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150
GO:GO:0009987	InterPro:Jas	EntrezGene:LOC100253142	wikigene:LOC100253142	InterPro:NINJA_B	InterPro:Ninja_fam
InterPro:Ninja_motif	PFAM:PF07897	PFAM:PF16135	PFAM:PF16136	PANTHER:PTHR31413	PANTHER:PTHR31413:SF6
UniParc:UPI000210A084	ArrayExpress:VIT_14s0068g00300	EnsemblPlantsGene:VIT_14s0068g00300	EnsemblPlants:VIT_14s0068g00300.t01	unigene:Vvi.17205	RefSeq:XP_002277117
RefSeq:XP_002277117.1	RefSeq:XP_002277117.2	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr14:-:23997514..24000870

Molecular Weight (calculated)

42173.3 Da

IEP (calculated)

9.781

GRAVY (calculated)

-0.696

Length

387 amino acids

Sequence
(BLAST)

001: MSMGEVGESG NRETQRVSVQ MNGLPGDLLQ RVIAGNLFPR KFEEAASEET GEIELSLGLS LNGRFGVDPK KAKMLTRSSS ISDFMTPLRY QDRASTVLPI
101: TALTRTCSLP METEEEWRKR KELQTLRRLE AKRKRTAKQR SYKTARSRDR DRASLEENCE EDKVVEDKPP MGRNGNHLQQ PYLGMPSWTI GGFIPSKTER
201: ANGLGDGGLK GNTTPPPPPP PPLPPSSQGS VGSQRSSSGI SEFESQPMQV KGVNKCSEAR SPASIQSLPG QSEQKPLISP GTPEKSGKVG GVVAENQPKK
301: PTISSRGVSE MARKVMEDMP CVSTTGDGPN GKKVDGFLYR YKKGEEVRIV CVCHGTFLSP AEFVKHAGGS DVAHPLRHIV VYPSSLL

Best Arabidopsis Sequence Match ( AT1G69260.1 )
(BLAST)

001: MAEANERSKE MARSNSCVFP RDLLQRFISN SVEGEDDDEE EDDDEIELNL GLSLGGRFGV DKSNKLVRSS SVVVTMPLFR EDHHHHQAAA MITTKVSTET
101: VAGATRGTGL MRTTSLPAES EEEWRKRKEM QTLRRMAAKR RRSEKLRTGV GGGNSNNPEE AATATASRRR GRPSSGLPRW SATANKSGLL RQHSAGLDSL
201: QVSGESLGGG RAAGSSSSVS ELETKASSDE ARSLPSTTQP QQETTTKPTN RLRRLSSVDM NMKMEPQGKG KSEMPCVFTK GDGPNGKRVD GILYRYGSGE
301: EVRIMCVCHG DFLSPADFVK HAGGPHVDHP LRHIVVNTSS PSNLL

Arabidopsis Description

AFP1Ninja-family protein AFP1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LQ98]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.