Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4A01G058100.1 | Wheat | nucleus | 72.31 | 71.14 |
| TraesCS4D01G246100.2 | Wheat | nucleus | 67.77 | 65.34 |
| Solyc02g066850.1.1 | Tomato | cytosol | 14.88 | 54.55 |
| Bra027018.1-P | Field mustard | cytosol | 11.98 | 49.15 |
| HORVU4Hr1G035770.1 | Barley | plastid | 22.31 | 48.65 |
| TraesCS3B01G594200.1 | Wheat | cytosol | 41.32 | 44.25 |
| Solyc06g083290.1.1 | Tomato | cytosol, extracellular, plastid | 12.4 | 44.12 |
| PGSC0003DMT400036544 | Potato | cytosol | 16.53 | 31.5 |
| Solyc02g032680.1.1 | Tomato | cytosol | 14.46 | 29.17 |
| PGSC0003DMT400089614 | Potato | cytosol | 16.12 | 28.68 |
| Solyc02g032710.1.1 | Tomato | cytosol | 15.7 | 28.15 |
| AT3G29575.1 | Thale cress | nucleus | 26.03 | 27.27 |
| Solyc02g066860.1.1 | Tomato | cytosol | 14.46 | 26.92 |
| Solyc02g032140.1.1 | Tomato | cytosol | 13.64 | 26.61 |
| TraesCS4B01G247000.1 | Wheat | nucleus | 43.39 | 26.52 |
| Solyc02g030650.1.1 | Tomato | nucleus | 19.01 | 25.56 |
| CDY00093 | Canola | nucleus | 26.45 | 25.2 |
| CDY19988 | Canola | nucleus | 26.45 | 25.1 |
| Bra036210.1-P | Field mustard | nucleus | 26.45 | 25.1 |
| PGSC0003DMT400095238 | Potato | cytosol, mitochondrion | 12.81 | 24.41 |
| CDY44386 | Canola | nucleus | 25.21 | 24.3 |
| Solyc02g066870.1.1 | Tomato | cytosol | 15.7 | 24.2 |
| CDY04085 | Canola | nucleus | 24.38 | 23.69 |
| Solyc02g030610.1.1 | Tomato | cytosol | 15.29 | 23.12 |
| CDX85274 | Canola | nucleus | 24.79 | 22.64 |
| CDX86364 | Canola | nucleus | 24.79 | 22.47 |
| Bra025400.1-P | Field mustard | nucleus | 24.79 | 22.47 |
| KRH54707 | Soybean | nucleus | 22.73 | 22.09 |
| TraesCS2B01G202700.2 | Wheat | nucleus | 28.51 | 21.84 |
| CDY68672 | Canola | cytosol, mitochondrion, nucleus, plastid | 24.79 | 21.74 |
| Solyc02g032690.1.1 | Tomato | cytosol | 21.49 | 21.67 |
| Bra039157.1-P | Field mustard | cytosol | 24.79 | 21.66 |
| PGSC0003DMT400003712 | Potato | nucleus | 28.1 | 21.66 |
| GSMUA_Achr3P30390_001 | Banana | nucleus | 29.34 | 21.45 |
| CDY43256 | Canola | mitochondrion | 24.79 | 21.43 |
| CDY36406 | Canola | nucleus | 25.62 | 21.23 |
| Os03t0214200-01 | Rice | nucleus | 35.12 | 21.2 |
| Solyc02g088910.2.1 | Tomato | nucleus | 27.27 | 20.82 |
| KRH63223 | Soybean | nucleus | 22.31 | 20.77 |
| CDX74273 | Canola | mitochondrion | 23.14 | 20.51 |
| GSMUA_Achr7P26660_001 | Banana | nucleus | 29.75 | 20.4 |
| CDY33807 | Canola | nucleus | 26.03 | 20.39 |
| Bra026891.1-P | Field mustard | nucleus | 26.03 | 20.39 |
| CDX91976 | Canola | mitochondrion | 23.97 | 20.35 |
| GSMUA_Achr4P14370_001 | Banana | nucleus | 28.1 | 20.3 |
| Bra004004.1-P | Field mustard | nucleus | 28.93 | 20.23 |
| CDY07354 | Canola | nucleus | 28.93 | 20.17 |
| Solyc02g032670.1.1 | Tomato | cytosol | 21.49 | 19.85 |
| Bra019706.1-P | Field mustard | nucleus | 25.62 | 19.62 |
| Zm00001d048085_P002 | Maize | nucleus | 31.82 | 19.59 |
| CDX98125 | Canola | nucleus | 25.62 | 19.44 |
| CDY16104 | Canola | nucleus | 24.79 | 19.42 |
| Bra001031.1-P | Field mustard | mitochondrion | 21.9 | 19.41 |
| Solyc02g030620.1.1 | Tomato | cytosol | 23.55 | 19.26 |
| AT1G69260.1 | Thale cress | nucleus | 27.27 | 19.13 |
| AT3G02140.1 | Thale cress | cytosol | 25.21 | 19.12 |
| Bra004368.1-P | Field mustard | nucleus | 25.62 | 19.02 |
| AT1G13740.1 | Thale cress | nucleus | 27.27 | 18.97 |
| CDY04272 | Canola | nucleus | 26.86 | 18.79 |
| AT3G07255.1 | Thale cress | nucleus | 22.73 | 18.77 |
| VIT_01s0011g00410.t01 | Wine grape | nucleus | 27.69 | 18.61 |
| EER92642 | Sorghum | nucleus | 30.17 | 18.53 |
| CDX95951 | Canola | nucleus | 25.62 | 18.45 |
| KRH56804 | Soybean | nucleus | 21.49 | 18.44 |
| KRH75067 | Soybean | nucleus | 30.99 | 18.43 |
| CDX74054 | Canola | nucleus | 21.9 | 18.4 |
| Bra001242.1-P | Field mustard | nucleus | 21.9 | 18.4 |
| CDY40905 | Canola | nucleus | 26.45 | 18.34 |
| Solyc02g030630.1.1 | Tomato | cytosol | 23.14 | 18.3 |
| Solyc04g005380.2.1 | Tomato | nucleus | 28.93 | 18.23 |
| EER89528 | Sorghum | nucleus | 26.86 | 18.21 |
| CDY08008 | Canola | cytosol | 21.49 | 18.12 |
| KRH01286 | Soybean | nucleus | 28.1 | 18.04 |
| GSMUA_Achr6P27430_001 | Banana | nucleus | 26.45 | 18.03 |
| PGSC0003DMT400045906 | Potato | nucleus | 28.51 | 17.78 |
| GSMUA_Achr3P15940_001 | Banana | nucleus | 25.62 | 17.77 |
| KRH70923 | Soybean | nucleus | 30.17 | 17.76 |
| Solyc02g066900.1.1 | Tomato | cytosol | 23.14 | 17.67 |
| CDY34910 | Canola | peroxisome | 20.25 | 17.56 |
| Bra033105.1-P | Field mustard | nucleus | 15.7 | 17.43 |
| VIT_14s0068g00300.t01 | Wine grape | nucleus | 27.69 | 17.31 |
| Bra040367.1-P | Field mustard | nucleus | 19.83 | 17.2 |
| KRH07456 | Soybean | nucleus | 24.79 | 17.14 |
| KRH03141 | Soybean | nucleus | 16.53 | 17.02 |
| Solyc01g058740.2.1 | Tomato | cytosol | 4.96 | 16.9 |
| PGSC0003DMT400051959 | Potato | nucleus | 17.77 | 16.73 |
| KRH45047 | Soybean | nucleus | 26.03 | 16.45 |
| KRH66123 | Soybean | nucleus | 23.97 | 16.38 |
| PGSC0003DMT400072760 | Potato | nucleus | 27.69 | 16.3 |
| Solyc02g066890.1.1 | Tomato | cytosol | 23.55 | 15.88 |
| VIT_00s0216g00060.t01 | Wine grape | nucleus | 22.73 | 15.36 |
| GSMUA_Achr9P07070_001 | Banana | mitochondrion | 26.03 | 14.79 |
| Solyc05g012210.2.1 | Tomato | extracellular, golgi | 28.1 | 14.69 |
| Solyc02g032720.1.1 | Tomato | cytosol | 20.25 | 13.24 |
| PGSC0003DMT400091590 | Potato | cytosol | 19.42 | 11.52 |
| Solyc02g066840.1.1 | Tomato | cytosol | 7.02 | 11.33 |
| VIT_17s0000g05280.t01 | Wine grape | nucleus | 19.42 | 11.01 |
| PGSC0003DMT400036545 | Potato | nucleus | 20.66 | 10.22 |
| Solyc02g030600.1.1 | Tomato | cytosol | 6.2 | 7.18 |
Protein Annotations
| EnsemblPlants:TraesCS4B01G246800.1 | EnsemblPlantsGene:TraesCS4B01G246800 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0009987 |
| InterPro:Jas | InterPro:Ninja_fam | InterPro:Ninja_motif | PANTHER:PTHR31413 | PFAM:PF07897 | PFAM:PF16135 |
| SEG:seg | MapMan:15.5.53.3 | : | : | : | : |
Description
No Description!
Coordinates
chr4B:+:510831518..510844337
Molecular Weight (calculated)
25255.2 Da
IEP (calculated)
10.220
GRAVY (calculated)
-0.158
Length
242 amino acids
Sequence
(BLAST)
(BLAST)
001: MDAYSKDMPR GVSGGDDGEK KVRRSESRTE EVDLTLGLSL GGRFGAKRRR VEGLAGSSSV AVAPPAPVGT NSSQGTGFPP NGVAVEPSAL LRATATLNPF
101: LGRAGAAGFQ PSATPLISSI KQEPVEGTPR AEGRGLSSAV VPWSSLASAV MIAATLGSRG EQQGASGRPA ALREMPLVWT RGLHNGMRTV GFLYQYSRVD
201: ELRIMCVCHG SFLTPAEFVE HAGGGQVANP LRSIIVKTPS WL
101: LGRAGAAGFQ PSATPLISSI KQEPVEGTPR AEGRGLSSAV VPWSSLASAV MIAATLGSRG EQQGASGRPA ALREMPLVWT RGLHNGMRTV GFLYQYSRVD
201: ELRIMCVCHG SFLTPAEFVE HAGGGQVANP LRSIIVKTPS WL
001: MGEASRQQRA WNREMTVTTN LSLDIDKYPR DLLRGFMSEN GGGRVFHGGE TNCDDESTIE LNLGLSLGGR FGVDKTPRKL KRSSSVLDTV PFNDSTVAEP
101: ENYTVGLERT TSLPAEMEEE WRKRKEMQSL RRMEAKRRRC EKQSFRVGNS DDQTVSFENE RWVTASKSGF LQRHLVSSNR QVCGVDSDGG GATGGGSSSS
201: LSELDNKNQQ GSSNSCNDER SPKIVAGCSS NSGSQGTERP SVTRANKVNE NENEKRVRSE DSVDRKGKGM ATSTGLVDMP CVFTKGDGPN GRRVDGILYK
301: YGKGEEVRIM CICHGSFLTP AEFVKHGGGG DVDRPLRHIV VNTSSSTF
101: ENYTVGLERT TSLPAEMEEE WRKRKEMQSL RRMEAKRRRC EKQSFRVGNS DDQTVSFENE RWVTASKSGF LQRHLVSSNR QVCGVDSDGG GATGGGSSSS
201: LSELDNKNQQ GSSNSCNDER SPKIVAGCSS NSGSQGTERP SVTRANKVNE NENEKRVRSE DSVDRKGKGM ATSTGLVDMP CVFTKGDGPN GRRVDGILYK
301: YGKGEEVRIM CICHGSFLTP AEFVKHGGGG DVDRPLRHIV VNTSSSTF
Arabidopsis Description
AFP2AFP2 [Source:UniProtKB/TrEMBL;Acc:A0A178WBB1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.