Factsheet for Solyc05g012210.2.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi, extracellular

Predictor Summary:

nucleus 2
cytosol 2
extracellular 4
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 4
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, golgi
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	cytosol
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	mitochondrion, nucleus, plastid
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	golgi

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g058740.2.1
Solyc02g030600.1.1
Solyc02g030610.1.1
Solyc02g030620.1.1
Solyc02g030630.1.1
Solyc02g030650.1.1
Solyc02g032670.1.1
Solyc02g032680.1.1
Solyc02g032690.1.1
Solyc02g032710.1.1
Solyc02g032720.1.1
Solyc02g066840.1.1
Solyc02g066850.1.1
Solyc02g066860.1.1
Solyc02g066870.1.1
Solyc02g066890.1.1
Solyc02g066900.1.1
Solyc02g088910.2.1
Solyc04g005380.2.1
Solyc05g012210.2.1
Solyc09g009490.2.1
Solyc10g076920.1.1
Solyc10g081350.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G13740.1	Solyc04g005380.2.1	AT1G13740.1	18484180
AT1G13740.1	Solyc05g012210.2.1	AT1G13740.1	18484180
AT1G13740.1	Solyc04g005380.2.1	AT1G69260.1	18484180
AT1G13740.1	Solyc05g012210.2.1	AT1G69260.1	18484180
AT1G13740.1	Solyc01g058740.2.1	AT3G02140.1	18484180
AT1G13740.1	Solyc02g030600.1.1	AT3G02140.1	18484180
AT1G13740.1	Solyc02g030610.1.1	AT3G02140.1	18484180
AT1G13740.1	Solyc02g030620.1.1	AT3G02140.1	18484180
AT1G13740.1	Solyc02g030630.1.1	AT3G02140.1	18484180
AT1G13740.1	Solyc02g030650.1.1	AT3G02140.1	18484180
AT1G13740.1	Solyc02g032670.1.1	AT3G02140.1	18484180
AT1G13740.1	Solyc02g032680.1.1	AT3G02140.1	18484180
AT1G13740.1	Solyc02g032690.1.1	AT3G02140.1	18484180
AT1G13740.1	Solyc02g032710.1.1	AT3G02140.1	18484180
AT1G13740.1	Solyc02g032720.1.1	AT3G02140.1	18484180
AT1G13740.1	Solyc02g066840.1.1	AT3G02140.1	18484180
AT1G13740.1	Solyc02g066850.1.1	AT3G02140.1	18484180
AT1G13740.1	Solyc02g066860.1.1	AT3G02140.1	18484180
AT1G13740.1	Solyc02g066870.1.1	AT3G02140.1	18484180
AT1G13740.1	Solyc02g066890.1.1	AT3G02140.1	18484180
AT1G13740.1	Solyc02g066900.1.1	AT3G02140.1	18484180
AT1G13740.1	Solyc02g088910.2.1	AT3G02140.1	18484180
AT1G13740.1	Solyc01g058740.2.1	AT3G29575.1	18484180
AT1G13740.1	Solyc02g030600.1.1	AT3G29575.1	18484180
AT1G13740.1	Solyc02g030610.1.1	AT3G29575.1	18484180
AT1G13740.1	Solyc02g030620.1.1	AT3G29575.1	18484180
AT1G13740.1	Solyc02g030630.1.1	AT3G29575.1	18484180
AT1G13740.1	Solyc02g030650.1.1	AT3G29575.1	18484180
AT1G13740.1	Solyc02g032670.1.1	AT3G29575.1	18484180
AT1G13740.1	Solyc02g032680.1.1	AT3G29575.1	18484180
AT1G13740.1	Solyc02g032690.1.1	AT3G29575.1	18484180
AT1G13740.1	Solyc02g032710.1.1	AT3G29575.1	18484180
AT1G13740.1	Solyc02g032720.1.1	AT3G29575.1	18484180
AT1G13740.1	Solyc02g066840.1.1	AT3G29575.1	18484180
AT1G13740.1	Solyc02g066850.1.1	AT3G29575.1	18484180
AT1G13740.1	Solyc02g066860.1.1	AT3G29575.1	18484180
AT1G13740.1	Solyc02g066870.1.1	AT3G29575.1	18484180
AT1G13740.1	Solyc02g066890.1.1	AT3G29575.1	18484180
AT1G13740.1	Solyc02g066900.1.1	AT3G29575.1	18484180
AT1G13740.1	Solyc02g088910.2.1	AT3G29575.1	18484180
AT1G13740.1	Solyc09g009490.2.1	AT3G44460.1	18484180
AT1G13740.1	Solyc10g076920.1.1	AT3G56850.1	18484180
AT1G13740.1	Solyc10g081350.1.1	AT3G56850.1	18484180
AT1G69260.1	Solyc04g005380.2.1	AT1G13740.1	18484180
AT1G69260.1	Solyc05g012210.2.1	AT1G13740.1	18484180
AT1G69260.1	Solyc01g058740.2.1	AT3G02140.1	18484180
AT1G69260.1	Solyc02g030600.1.1	AT3G02140.1	18484180
AT1G69260.1	Solyc02g030610.1.1	AT3G02140.1	18484180
AT1G69260.1	Solyc02g030620.1.1	AT3G02140.1	18484180
AT1G69260.1	Solyc02g030630.1.1	AT3G02140.1	18484180
AT1G69260.1	Solyc02g030650.1.1	AT3G02140.1	18484180
AT1G69260.1	Solyc02g032670.1.1	AT3G02140.1	18484180
AT1G69260.1	Solyc02g032680.1.1	AT3G02140.1	18484180
AT1G69260.1	Solyc02g032690.1.1	AT3G02140.1	18484180
AT1G69260.1	Solyc02g032710.1.1	AT3G02140.1	18484180
AT1G69260.1	Solyc02g032720.1.1	AT3G02140.1	18484180
AT1G69260.1	Solyc02g066840.1.1	AT3G02140.1	18484180
AT1G69260.1	Solyc02g066850.1.1	AT3G02140.1	18484180
AT1G69260.1	Solyc02g066860.1.1	AT3G02140.1	18484180
AT1G69260.1	Solyc02g066870.1.1	AT3G02140.1	18484180
AT1G69260.1	Solyc02g066890.1.1	AT3G02140.1	18484180
AT1G69260.1	Solyc02g066900.1.1	AT3G02140.1	18484180
AT1G69260.1	Solyc02g088910.2.1	AT3G02140.1	18484180
AT1G69260.1	Solyc01g058740.2.1	AT3G29575.1	18484180
AT1G69260.1	Solyc02g030600.1.1	AT3G29575.1	18484180
AT1G69260.1	Solyc02g030610.1.1	AT3G29575.1	18484180
AT1G69260.1	Solyc02g030620.1.1	AT3G29575.1	18484180
AT1G69260.1	Solyc02g030630.1.1	AT3G29575.1	18484180
AT1G69260.1	Solyc02g030650.1.1	AT3G29575.1	18484180
AT1G69260.1	Solyc02g032670.1.1	AT3G29575.1	18484180
AT1G69260.1	Solyc02g032680.1.1	AT3G29575.1	18484180
AT1G69260.1	Solyc02g032690.1.1	AT3G29575.1	18484180
AT1G69260.1	Solyc02g032710.1.1	AT3G29575.1	18484180
AT1G69260.1	Solyc02g032720.1.1	AT3G29575.1	18484180
AT1G69260.1	Solyc02g066840.1.1	AT3G29575.1	18484180
AT1G69260.1	Solyc02g066850.1.1	AT3G29575.1	18484180
AT1G69260.1	Solyc02g066860.1.1	AT3G29575.1	18484180
AT1G69260.1	Solyc02g066870.1.1	AT3G29575.1	18484180
AT1G69260.1	Solyc02g066890.1.1	AT3G29575.1	18484180
AT1G69260.1	Solyc02g066900.1.1	AT3G29575.1	18484180
AT1G69260.1	Solyc02g088910.2.1	AT3G29575.1	18484180
AT1G69260.1	Solyc09g009490.2.1	AT3G44460.1	18484180
AT1G69260.1	Solyc10g076920.1.1	AT3G56850.1	18484180
AT1G69260.1	Solyc10g081350.1.1	AT3G56850.1	18484180

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400072760	Potato	nucleus	58.75	66.18
Solyc02g066850.1.1	Tomato	cytosol	8.42	59.09
GSMUA_Achr4P32830_001	Banana	nucleus	15.33	52.21
Solyc06g083290.1.1	Tomato	cytosol, extracellular, plastid	7.56	51.47
VIT_01s0011g00410.t01	Wine grape	nucleus	34.56	44.44
Bra026891.1-P	Field mustard	nucleus	29.16	43.69
CDY33807	Canola	nucleus	29.16	43.69
CDY16104	Canola	nucleus	28.94	43.37
Solyc04g005380.2.1	Tomato	nucleus	33.26	40.1
AT1G69260.1	Thale cress	nucleus	29.81	40.0
CDY36406	Canola	nucleus	25.05	39.73
CDY04272	Canola	nucleus	29.37	39.31
Solyc02g088910.2.1	Tomato	nucleus	26.57	38.8
Bra019706.1-P	Field mustard	nucleus	26.35	38.61
CDX98125	Canola	nucleus	26.57	38.56
Bra004004.1-P	Field mustard	nucleus	28.73	38.44
Bra004368.1-P	Field mustard	nucleus	27.0	38.34
CDY07354	Canola	nucleus	28.73	38.33
Solyc02g032680.1.1	Tomato	cytosol	9.72	37.5
CDY40905	Canola	nucleus	28.08	37.25
KRH70923	Soybean	nucleus	33.05	37.23
KRH75067	Soybean	nucleus	32.61	37.1
AT1G13740.1	Thale cress	nucleus	27.65	36.78
CDX95951	Canola	nucleus	26.57	36.61
HORVU4Hr1G035770.1	Barley	plastid	8.42	35.14
GSMUA_Achr9P09330_001	Banana	nucleus	25.27	34.62
GSMUA_Achr5P01470_001	Banana	nucleus	21.38	34.49
Solyc02g066860.1.1	Tomato	cytosol	9.5	33.85
Solyc02g030650.1.1	Tomato	nucleus	12.74	32.78
Solyc02g032710.1.1	Tomato	cytosol	9.5	32.59
Solyc02g066870.1.1	Tomato	cytosol	10.8	31.85
GSMUA_Achr6P34980_001	Banana	cytosol	19.22	31.45
Solyc02g030610.1.1	Tomato	cytosol	10.8	31.25
TraesCS3B01G594200.1	Wheat	cytosol	14.47	29.65
Solyc02g032690.1.1	Tomato	cytosol	15.33	29.58
TraesCS3D01G532000.1	Wheat	nucleus	10.8	29.41
Solyc02g032140.1.1	Tomato	cytosol	7.78	29.03
TraesCS4A01G058100.1	Wheat	nucleus	15.33	28.86
TraesCS4B01G246800.1	Wheat	nucleus	14.69	28.1
EER89528	Sorghum	nucleus	21.6	28.01
Os03t0214200-01	Rice	nucleus	24.19	27.93
EER92642	Sorghum	nucleus	23.54	27.66
Solyc02g032670.1.1	Tomato	cytosol	15.55	27.48
Zm00001d048085_P002	Maize	nucleus	22.46	26.46
Solyc02g030620.1.1	Tomato	cytosol	16.41	25.68
TraesCS4B01G247000.1	Wheat	nucleus	21.81	25.51
TraesCS4D01G246400.1	Wheat	nucleus	21.81	25.51
TraesCS4D01G246100.2	Wheat	nucleus	13.82	25.5
HORVU4Hr1G067930.1	Barley	nucleus	22.25	25.5
Solyc01g058740.2.1	Tomato	cytosol	3.89	25.35
Solyc02g030630.1.1	Tomato	cytosol	16.2	24.51
Solyc02g066900.1.1	Tomato	cytosol	15.55	22.71
TraesCS4A01G057800.1	Wheat	cytosol, mitochondrion, nucleus, plastid	22.89	20.74
Solyc02g066890.1.1	Tomato	cytosol	15.98	20.61
Solyc02g032720.1.1	Tomato	cytosol	15.98	20.0
Solyc02g066840.1.1	Tomato	cytosol	6.26	19.33
Solyc02g030600.1.1	Tomato	cytosol	6.26	13.88

Protein Annotations

MapMan:15.5.53.3	ncoils:Coil	GO:GO:0005575	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150
GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	InterPro:Jas	UniProt:K4BXU4	InterPro:NINJA_B
InterPro:Ninja_fam	InterPro:Ninja_motif	PFAM:PF07897	PFAM:PF16135	PFAM:PF16136	PANTHER:PTHR31413
PANTHER:PTHR31413:SF6	EnsemblPlantsGene:Solyc05g012210.2	EnsemblPlants:Solyc05g012210.2.1	TMHMM:TMhelix	UniParc:UPI0002765685	SEG:seg

Description

No Description!

Coordinates

chr5:+:5491138..5495631

Molecular Weight (calculated)

50801.2 Da

IEP (calculated)

9.658

GRAVY (calculated)

-0.455

Length

463 amino acids

Sequence
(BLAST)

001: MEVLNMHVHV RIGKFFNFGL VFLIVYLVGL WFAMGDNTDE KRKSRIEMEN LSMETNRFSR DLLQRFMGGG SSSGSSSGKS RVEVVVAGGK EVKEEEDEGE
101: VELNLGLSLG GRFGVDKSSS SNKLIRSSSV ASCLPIVRDD DALAPPPVSY PTLVRTSSLP VETEEEWRKR KELQTLRRME AKRRRSEKQR NLRGDKEGGG
201: GTTVVVGGGG GGGSMEDEKK EIEMNLRGRL DKEQYLMSAK RFGLSVSPTL AAVEVKCKDM GNWGHKVLLN PKVVVVLQVC LNWKVNFHKV KCCCCAVGLI
301: RLSRWLRELS FIATSGSHDN CRKKCRRSGE LSPASIHSLQ GGGSQDMGSS GSKMRETGSR MSAGDMDSPS KKLEAAKSRA KEKETGTNTL ENMPCVFTKG
401: DGPNGKRVDG ILYRYSKGEE VRIMCVCHGS FHSPAEFVKH AGGTDVAHPL KHIVINPNAS PLL

Best Arabidopsis Sequence Match ( AT3G29575.3 )
(BLAST)

001: MSKKQRLSEE DGEVEIELDL GLSLNGRFGV DPLAKTRLMR STSVLDLVVN DRSGLSRTCS LPVETEEEWR KRKELQSLRR LEAKRKRSEK QRKHKACGGE
101: EKVVEEGSIG SSGSGSSGLS EVDTLLPPVQ ATTNKSVETS PSSAQSQPEN LGKEASQNII EDMPFVSTTG DGPNGKKING FLYRYRKGEE VRIVCVCHGS
201: FLSPAEFVKH AGGGDVAHPL KHIVVNPSPF L

Arabidopsis Description

AFP3Ninja-family protein AFP3 [Source:UniProtKB/Swiss-Prot;Acc:Q94F39]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.