Factsheet for Bra004368.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra001031.1-P
Bra003253.1-P
Bra007274.1-P
Bra007276.1-P
Bra014668.1-P
Bra019436.1-P
Bra019706.1-P
Bra025400.1-P
Bra026891.1-P
Bra033105.1-P
Bra036210.1-P
Bra039157.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G69260.1	Bra019706.1-P	AT1G13740.1	18484180
AT1G69260.1	Bra026891.1-P	AT1G13740.1	18484180
AT1G69260.1	Bra001031.1-P	AT3G02140.1	18484180
AT1G69260.1	Bra039157.1-P	AT3G02140.1	18484180
AT1G69260.1	Bra025400.1-P	AT3G29575.1	18484180
AT1G69260.1	Bra033105.1-P	AT3G29575.1	18484180
AT1G69260.1	Bra036210.1-P	AT3G29575.1	18484180
AT1G69260.1	Bra019436.1-P	AT3G44460.1	18484180
AT1G69260.1	Bra003253.1-P	AT3G56850.1	18484180
AT1G69260.1	Bra007274.1-P	AT3G56850.1	18484180
AT1G69260.1	Bra007276.1-P	AT3G56850.1	18484180
AT1G69260.1	Bra014668.1-P	AT3G56850.1	18484180

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX95951	Canola	nucleus	94.79	91.96
Bra027018.1-P	Field mustard	cytosol	9.51	52.54
GSMUA_Achr4P32830_001	Banana	nucleus	19.94	47.79
AT1G69260.1	Thale cress	nucleus	50.31	47.54
Bra036210.1-P	Field mustard	nucleus	34.36	43.92
Bra004004.1-P	Field mustard	nucleus	46.32	43.64
Bra025400.1-P	Field mustard	nucleus	33.13	40.45
Bra033105.1-P	Field mustard	nucleus	26.69	39.91
Bra026891.1-P	Field mustard	nucleus	37.42	39.48
Bra019706.1-P	Field mustard	nucleus	37.12	38.29
VIT_01s0011g00410.t01	Wine grape	nucleus	38.96	35.28
GSMUA_Achr9P09330_001	Banana	nucleus	35.58	34.32
KRH70923	Soybean	nucleus	42.94	34.06
KRH75067	Soybean	nucleus	41.1	32.92
Solyc04g005380.2.1	Tomato	nucleus	38.65	32.81
PGSC0003DMT400045906	Potato	nucleus	38.65	32.47
PGSC0003DMT400072760	Potato	nucleus	40.18	31.87
Bra001031.1-P	Field mustard	mitochondrion	26.38	31.5
HORVU4Hr1G035770.1	Barley	plastid	10.43	30.63
GSMUA_Achr5P01470_001	Banana	nucleus	26.07	29.62
TraesCS3D01G532000.1	Wheat	nucleus	15.34	29.41
Bra039157.1-P	Field mustard	cytosol	24.85	29.24
Solyc05g012210.2.1	Tomato	extracellular, golgi	38.34	27.0
TraesCS3B01G594200.1	Wheat	cytosol	18.71	26.99
GSMUA_Achr6P34980_001	Banana	cytosol	23.31	26.86
Os03t0214200-01	Rice	nucleus	31.9	25.94
TraesCS4B01G246800.1	Wheat	nucleus	19.02	25.62
EER89528	Sorghum	nucleus	26.69	24.37
Bra001242.1-P	Field mustard	nucleus	20.86	23.61
Zm00001d048085_P002	Maize	nucleus	28.22	23.41
EER92642	Sorghum	nucleus	28.22	23.35
Bra040367.1-P	Field mustard	nucleus	19.94	23.3
TraesCS4A01G058100.1	Wheat	nucleus	17.18	22.76
TraesCS4D01G246400.1	Wheat	nucleus	26.38	21.72
TraesCS4D01G246100.2	Wheat	nucleus	16.56	21.51
TraesCS4B01G247000.1	Wheat	nucleus	25.77	21.21
HORVU4Hr1G067930.1	Barley	nucleus	24.85	20.05
TraesCS4A01G057800.1	Wheat	cytosol, mitochondrion, nucleus, plastid	27.3	17.42

Protein Annotations

EnsemblPlants:Bra004368.1	EnsemblPlants:Bra004368.1-P	EnsemblPlantsGene:Bra004368	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150
GO:GO:0009987	InterPro:Jas	InterPro:NINJA_B	InterPro:Ninja_fam	InterPro:Ninja_motif	PANTHER:PTHR31413
PANTHER:PTHR31413:SF6	PFAM:PF07897	PFAM:PF16135	PFAM:PF16136	SEG:seg	UniParc:UPI0002541834
UniProt:M4CJI4	MapMan:15.5.53.3	:	:	:	:

Description

AT1G69260 (E=3e-080) AFP1 | AFP1 (ABI FIVE BINDING PROTEIN)

Coordinates

chrA07:+:18278617..18279878

Molecular Weight (calculated)

36210.9 Da

IEP (calculated)

8.040

GRAVY (calculated)

-0.757

Length

326 amino acids

Sequence
(BLAST)

001: MSRSMFPRDL LQRFPPISAK VVDGEEEEDE EIELDLSLSL GGRFGVDKSK LARSSSVVGP TMPFFRENHQ PETEMRPVET SVAGHMALTR ATSLPVETEE
101: EWRRRKEMES LRRMEAKRRR SEKLRARGSG GGNIIKPPEA NNDSVLGEGS TPTRRRGRPR LVLPRWSGTA NDGGLLRQHS AAHDSLQVSR GSSSSVSEME
201: TKSRQASSEE TRSLPLPQQQ HQQEAMAMPD NGLRRLSSVD MRIEPPPLGN GKNEMPCVFT RGDGPNGKRV DGILYRYGNG EEVKIMCACH CDILSPADFV
301: KHAGGPHVDH PLRHIIVDTS SLSNLF

Best Arabidopsis Sequence Match ( AT1G69260.1 )
(BLAST)

001: MAEANERSKE MARSNSCVFP RDLLQRFISN SVEGEDDDEE EDDDEIELNL GLSLGGRFGV DKSNKLVRSS SVVVTMPLFR EDHHHHQAAA MITTKVSTET
101: VAGATRGTGL MRTTSLPAES EEEWRKRKEM QTLRRMAAKR RRSEKLRTGV GGGNSNNPEE AATATASRRR GRPSSGLPRW SATANKSGLL RQHSAGLDSL
201: QVSGESLGGG RAAGSSSSVS ELETKASSDE ARSLPSTTQP QQETTTKPTN RLRRLSSVDM NMKMEPQGKG KSEMPCVFTK GDGPNGKRVD GILYRYGSGE
301: EVRIMCVCHG DFLSPADFVK HAGGPHVDHP LRHIVVNTSS PSNLL

Arabidopsis Description

AFP1Ninja-family protein AFP1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LQ98]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.