Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- peroxisome 2
- nucleus 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY34910 | Canola | peroxisome | 90.32 | 90.32 |
| Bra027018.1-P | Field mustard | cytosol | 17.56 | 83.05 |
| Solyc06g083290.1.1 | Tomato | cytosol, extracellular, plastid | 14.7 | 60.29 |
| AT3G07255.1 | Thale cress | nucleus | 51.61 | 49.15 |
| Bra001242.1-P | Field mustard | nucleus | 49.1 | 47.57 |
| GSMUA_Achr4P32830_001 | Banana | nucleus | 15.41 | 31.62 |
| HORVU4Hr1G035770.1 | Barley | plastid | 10.75 | 27.03 |
| Bra025400.1-P | Field mustard | nucleus | 24.37 | 25.47 |
| Bra036210.1-P | Field mustard | nucleus | 22.58 | 24.71 |
| PGSC0003DMT400051959 | Potato | nucleus | 21.15 | 22.96 |
| Bra026891.1-P | Field mustard | nucleus | 25.09 | 22.65 |
| KRH07456 | Soybean | nucleus | 28.32 | 22.57 |
| TraesCS3D01G532000.1 | Wheat | nucleus | 13.62 | 22.35 |
| KRH66123 | Soybean | nucleus | 27.96 | 22.03 |
| Bra039157.1-P | Field mustard | cytosol | 21.15 | 21.3 |
| GSMUA_Achr5P01470_001 | Banana | nucleus | 21.86 | 21.25 |
| Bra019706.1-P | Field mustard | nucleus | 24.01 | 21.2 |
| GSMUA_Achr6P34980_001 | Banana | cytosol | 20.79 | 20.49 |
| VIT_00s0216g00060.t01 | Wine grape | nucleus | 26.16 | 20.39 |
| TraesCS4A01G058100.1 | Wheat | nucleus | 17.92 | 20.33 |
| GSMUA_Achr9P09330_001 | Banana | nucleus | 24.37 | 20.12 |
| Bra004368.1-P | Field mustard | nucleus | 23.3 | 19.94 |
| TraesCS4B01G246800.1 | Wheat | nucleus | 17.2 | 19.83 |
| Bra001031.1-P | Field mustard | mitochondrion | 19.35 | 19.78 |
| Bra004004.1-P | Field mustard | nucleus | 24.01 | 19.36 |
| TraesCS3B01G594200.1 | Wheat | cytosol | 15.41 | 19.03 |
| Bra033105.1-P | Field mustard | nucleus | 14.7 | 18.81 |
| TraesCS4D01G246100.2 | Wheat | nucleus | 15.77 | 17.53 |
| Zm00001d048085_P002 | Maize | nucleus | 22.22 | 15.78 |
| EER92642 | Sorghum | nucleus | 22.22 | 15.74 |
| EER89528 | Sorghum | nucleus | 19.71 | 15.41 |
| Os03t0214200-01 | Rice | nucleus | 21.51 | 14.96 |
| TraesCS4D01G246400.1 | Wheat | nucleus | 21.15 | 14.9 |
| TraesCS4B01G247000.1 | Wheat | nucleus | 20.79 | 14.65 |
| HORVU4Hr1G067930.1 | Barley | nucleus | 16.85 | 11.63 |
| TraesCS4A01G057800.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 21.15 | 11.55 |
Protein Annotations
| EnsemblPlants:Bra040367.1 | EnsemblPlants:Bra040367.1-P | EnsemblPlantsGene:Bra040367 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 |
| GO:GO:0009987 | InterPro:Jas | InterPro:Ninja_fam | PANTHER:PTHR31413 | PANTHER:PTHR31413:SF11 | PFAM:PF16135 |
| SEG:seg | UniParc:UPI000254492D | UniProt:M4FGY9 | MapMan:15.5.53.3 | : | : |
Description
AT3G07250 (E=3e-059) | nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein
Coordinates
chrA01:+:27978031..27979163
Molecular Weight (calculated)
30066.0 Da
IEP (calculated)
6.253
GRAVY (calculated)
-0.707
Length
279 amino acids
Sequence
(BLAST)
(BLAST)
001: MATKLGKDED AAVELELCLS LGGPFKKAQP LEFCTESKPN NAVRCVEDID VDLNDGAVRH EINETRTKET RKEREGKQQQ RSGGEGEYKR IRTECKEVTN
101: GVDQFDLSFS GLGNGYRSGQ YKENSKAATI GSPICSSSDV SDPSGSCELG INSDQTKPVK SPVNNITTDT NEGQEDAVVV ETQEWSSSVA KETGKPPKPR
201: PKGNGSMPPF AQMPCVTSTG NGPQGKTVNG FLHRYTKSEI SIICVCHGTS FSPAEFIIHA GGTNGSHPLR HITVVPSKF
101: GVDQFDLSFS GLGNGYRSGQ YKENSKAATI GSPICSSSDV SDPSGSCELG INSDQTKPVK SPVNNITTDT NEGQEDAVVV ETQEWSSSVA KETGKPPKPR
201: PKGNGSMPPF AQMPCVTSTG NGPQGKTVNG FLHRYTKSEI SIICVCHGTS FSPAEFIIHA GGTNGSHPLR HITVVPSKF
001: MFVESLSMAE KFVEDENVEV ELELELCLSL GGPFKKTEKS KTFGQSNAVG FEKDNGVNLD GRTTNVTRIK ETRKKREAKQ QQRSGEEGEC KRIRTEYNGV
101: SNGDDMDLSS INMCNGYGSG RLKESSKDVT IGSPICTSSS VSDPSSSSRQ EGGSGDIGAQ SGQTKQVRSP VNNILTGTEQ TVHNTDGSKD AETQEWSNSS
201: VTKESGKPPK PHTNSNGNGS LLPFAQMPCV TSTGNGPEGK TVNGFLYRYS KSEISIICVC HGTSFSPAEF IVHAGGTNVS HPLRHITVVP STL
101: SNGDDMDLSS INMCNGYGSG RLKESSKDVT IGSPICTSSS VSDPSSSSRQ EGGSGDIGAQ SGQTKQVRSP VNNILTGTEQ TVHNTDGSKD AETQEWSNSS
201: VTKESGKPPK PHTNSNGNGS LLPFAQMPCV TSTGNGPEGK TVNGFLYRYS KSEISIICVC HGTSFSPAEF IVHAGGTNVS HPLRHITVVP STL
Arabidopsis Description
Nuclear transport factor 2/RNA recognition motif protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LNF2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.