Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra027018.1-P | Field mustard | cytosol | 17.41 | 86.44 |
| Solyc06g083290.1.1 | Tomato | cytosol, extracellular, plastid | 13.65 | 58.82 |
| CDX74054 | Canola | nucleus | 52.56 | 53.47 |
| Bra001242.1-P | Field mustard | nucleus | 52.56 | 53.47 |
| Bra040367.1-P | Field mustard | nucleus | 49.15 | 51.61 |
| CDY34910 | Canola | peroxisome | 48.81 | 51.25 |
| CDY08008 | Canola | cytosol | 44.71 | 45.64 |
| GSMUA_Achr4P32830_001 | Banana | nucleus | 15.02 | 32.35 |
| AT3G29575.1 | Thale cress | nucleus | 24.23 | 30.74 |
| HORVU4Hr1G035770.1 | Barley | plastid | 11.6 | 30.63 |
| GSMUA_Achr5P01470_001 | Banana | nucleus | 22.87 | 23.34 |
| TraesCS3B01G594200.1 | Wheat | cytosol | 17.75 | 23.01 |
| TraesCS4A01G058100.1 | Wheat | nucleus | 19.11 | 22.76 |
| TraesCS4B01G246800.1 | Wheat | nucleus | 18.77 | 22.73 |
| TraesCS3D01G532000.1 | Wheat | nucleus | 12.97 | 22.35 |
| TraesCS4D01G246100.2 | Wheat | nucleus | 18.77 | 21.91 |
| PGSC0003DMT400051959 | Potato | nucleus | 18.77 | 21.4 |
| KRH07456 | Soybean | nucleus | 24.91 | 20.86 |
| VIT_00s0216g00060.t01 | Wine grape | nucleus | 25.26 | 20.67 |
| KRH66123 | Soybean | nucleus | 24.57 | 20.34 |
| GSMUA_Achr6P34980_001 | Banana | cytosol | 19.11 | 19.79 |
| AT1G69260.1 | Thale cress | nucleus | 22.53 | 19.13 |
| AT1G13740.1 | Thale cress | nucleus | 22.18 | 18.68 |
| GSMUA_Achr9P09330_001 | Banana | nucleus | 21.5 | 18.64 |
| AT3G02140.1 | Thale cress | cytosol | 19.45 | 17.87 |
| Zm00001d048085_P002 | Maize | nucleus | 21.16 | 15.78 |
| Os03t0214200-01 | Rice | nucleus | 20.48 | 14.96 |
| TraesCS4B01G247000.1 | Wheat | nucleus | 19.8 | 14.65 |
| EER92642 | Sorghum | nucleus | 19.45 | 14.47 |
| TraesCS4D01G246400.1 | Wheat | nucleus | 19.45 | 14.39 |
| EER89528 | Sorghum | nucleus | 17.06 | 14.01 |
| HORVU4Hr1G067930.1 | Barley | nucleus | 18.43 | 13.37 |
| TraesCS4A01G057800.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 20.14 | 11.55 |
Protein Annotations
| ArrayExpress:AT3G07255 | EnsemblPlants:AT3G07255.1 | EnsemblPlantsGene:AT3G07255 | EntrezGene:28718981 | GO:GO:0007154 | GO:GO:0007165 |
| GO:GO:0008150 | GO:GO:0009987 | InterPro:Jas | InterPro:Ninja_fam | InterPro:Ninja_motif | ncoils:Coil |
| PANTHER:PTHR31413 | PANTHER:PTHR31413:SF11 | PFAM:PF07897 | PFAM:PF16135 | ProteinID:ANM64110.1 | RefSeq:NP_001326160.1 |
| SEG:seg | UniParc:UPI0008491199 | UniProt:A0A1I9LNF2 | MapMan:15.5.53.3 | : | : |
Description
Nuclear transport factor 2/RNA recognition motif protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LNF2]
Coordinates
chr3:-:2307082..2308456
Molecular Weight (calculated)
31452.5 Da
IEP (calculated)
6.256
GRAVY (calculated)
-0.695
Length
293 amino acids
Sequence
(BLAST)
(BLAST)
001: MFVESLSMAE KFVEDENVEV ELELELCLSL GGPFKKTEKS KTFGQSNAVG FEKDNGVNLD GRTTNVTRIK ETRKKREAKQ QQRSGEEGEC KRIRTEYNGV
101: SNGDDMDLSS INMCNGYGSG RLKESSKDVT IGSPICTSSS VSDPSSSSRQ EGGSGDIGAQ SGQTKQVRSP VNNILTGTEQ TVHNTDGSKD AETQEWSNSS
201: VTKESGKPPK PHTNSNGNGS LLPFAQMPCV TSTGNGPEGK TVNGFLYRYS KSEISIICVC HGTSFSPAEF IVHAGGTNVS HPLRHITVVP STL
101: SNGDDMDLSS INMCNGYGSG RLKESSKDVT IGSPICTSSS VSDPSSSSRQ EGGSGDIGAQ SGQTKQVRSP VNNILTGTEQ TVHNTDGSKD AETQEWSNSS
201: VTKESGKPPK PHTNSNGNGS LLPFAQMPCV TSTGNGPEGK TVNGFLYRYS KSEISIICVC HGTSFSPAEF IVHAGGTNVS HPLRHITVVP STL
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.