Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU3Hr1G084360.2 | |
| HORVU4Hr1G035770.1 | |
| HORVU4Hr1G067930.1 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4B01G247000.1 | Wheat | nucleus | 62.62 | 63.89 |
| TraesCS4D01G246400.1 | Wheat | nucleus | 54.46 | 55.56 |
| Solyc02g066850.1.1 | Tomato | cytosol | 8.66 | 53.03 |
| TraesCS4A01G057800.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 63.86 | 50.49 |
| Solyc06g083290.1.1 | Tomato | cytosol, extracellular, plastid | 8.17 | 48.53 |
| Bra027018.1-P | Field mustard | cytosol | 6.93 | 47.46 |
| HORVU4Hr1G035770.1 | Barley | plastid | 11.63 | 42.34 |
| CDY00093 | Canola | nucleus | 23.51 | 37.4 |
| CDY19988 | Canola | nucleus | 23.27 | 36.86 |
| Bra036210.1-P | Field mustard | nucleus | 23.27 | 36.86 |
| Os03t0214200-01 | Rice | nucleus | 35.4 | 35.66 |
| AT3G29575.1 | Thale cress | nucleus | 20.3 | 35.5 |
| CDY04085 | Canola | nucleus | 21.53 | 34.94 |
| GSMUA_Achr3P30390_001 | Banana | nucleus | 27.97 | 34.14 |
| PGSC0003DMT400036544 | Potato | cytosol | 10.64 | 33.86 |
| CDY44386 | Canola | nucleus | 20.79 | 33.47 |
| CDX85274 | Canola | nucleus | 21.78 | 33.21 |
| Zm00001d048085_P002 | Maize | nucleus | 32.18 | 33.08 |
| Bra025400.1-P | Field mustard | nucleus | 21.78 | 32.96 |
| CDX86364 | Canola | nucleus | 21.78 | 32.96 |
| GSMUA_Achr4P14370_001 | Banana | nucleus | 27.23 | 32.84 |
| EER92642 | Sorghum | nucleus | 31.93 | 32.74 |
| EER89528 | Sorghum | nucleus | 28.22 | 31.93 |
| PGSC0003DMT400003712 | Potato | nucleus | 24.75 | 31.85 |
| HORVU2Hr1G032690.1 | Barley | cytosol | 18.56 | 31.78 |
| Solyc02g032710.1.1 | Tomato | cytosol | 10.4 | 31.11 |
| Solyc02g088910.2.1 | Tomato | nucleus | 23.76 | 30.28 |
| Bra004004.1-P | Field mustard | nucleus | 25.74 | 30.06 |
| GSMUA_Achr7P26660_001 | Banana | nucleus | 26.24 | 30.03 |
| Bra026891.1-P | Field mustard | nucleus | 22.77 | 29.77 |
| CDY33807 | Canola | nucleus | 22.77 | 29.77 |
| CDY16104 | Canola | nucleus | 22.77 | 29.77 |
| VIT_01s0011g00410.t01 | Wine grape | nucleus | 26.49 | 29.72 |
| CDY07354 | Canola | nucleus | 25.5 | 29.68 |
| GSMUA_Achr6P27430_001 | Banana | nucleus | 25.99 | 29.58 |
| CDY04272 | Canola | nucleus | 25.25 | 29.48 |
| Solyc02g066870.1.1 | Tomato | cytosol | 11.39 | 29.3 |
| GSMUA_Achr3P15940_001 | Banana | nucleus | 25.25 | 29.23 |
| CDY36406 | Canola | nucleus | 20.79 | 28.77 |
| PGSC0003DMT400089614 | Potato | cytosol | 9.65 | 28.68 |
| Bra019706.1-P | Field mustard | nucleus | 22.28 | 28.48 |
| Solyc02g030650.1.1 | Tomato | nucleus | 12.38 | 27.78 |
| Solyc02g066860.1.1 | Tomato | cytosol | 8.91 | 27.69 |
| CDX98125 | Canola | nucleus | 21.78 | 27.59 |
| PGSC0003DMT400095238 | Potato | cytosol, mitochondrion | 8.66 | 27.56 |
| Bra033105.1-P | Field mustard | nucleus | 14.85 | 27.52 |
| Solyc02g032680.1.1 | Tomato | cytosol | 8.17 | 27.5 |
| CDX74273 | Canola | mitochondrion | 18.56 | 27.47 |
| KRH63223 | Soybean | nucleus | 17.57 | 27.31 |
| AT1G13740.1 | Thale cress | nucleus | 23.51 | 27.3 |
| KRH75067 | Soybean | nucleus | 26.98 | 26.78 |
| Solyc02g032140.1.1 | Tomato | cytosol | 8.17 | 26.61 |
| PGSC0003DMT400045906 | Potato | nucleus | 25.5 | 26.55 |
| CDY68672 | Canola | cytosol, mitochondrion, nucleus, plastid | 18.07 | 26.45 |
| CDX91976 | Canola | mitochondrion | 18.56 | 26.32 |
| PGSC0003DMT400072760 | Potato | nucleus | 26.73 | 26.28 |
| KRH54707 | Soybean | nucleus | 16.09 | 26.1 |
| AT1G69260.1 | Thale cress | nucleus | 22.28 | 26.09 |
| Bra039157.1-P | Field mustard | cytosol | 17.82 | 25.99 |
| CDY43256 | Canola | mitochondrion | 17.82 | 25.71 |
| Bra001031.1-P | Field mustard | mitochondrion | 17.33 | 25.64 |
| Solyc02g030610.1.1 | Tomato | cytosol | 10.15 | 25.62 |
| Solyc04g005380.2.1 | Tomato | nucleus | 24.26 | 25.52 |
| CDY40905 | Canola | nucleus | 22.03 | 25.5 |
| Solyc02g032690.1.1 | Tomato | cytosol | 15.1 | 25.42 |
| KRH70923 | Soybean | nucleus | 25.74 | 25.3 |
| Bra004368.1-P | Field mustard | nucleus | 20.05 | 24.85 |
| VIT_14s0068g00300.t01 | Wine grape | nucleus | 23.51 | 24.55 |
| CDX95951 | Canola | nucleus | 20.05 | 24.11 |
| GSMUA_Achr9P07070_001 | Banana | mitochondrion | 24.75 | 23.47 |
| KRH01286 | Soybean | nucleus | 21.78 | 23.34 |
| KRH45047 | Soybean | nucleus | 22.03 | 23.24 |
| AT3G02140.1 | Thale cress | cytosol | 18.07 | 22.88 |
| Solyc02g032670.1.1 | Tomato | cytosol | 14.6 | 22.52 |
| KRH56804 | Soybean | nucleus | 15.59 | 22.34 |
| Solyc05g012210.2.1 | Tomato | extracellular, golgi | 25.5 | 22.25 |
| Solyc02g030630.1.1 | Tomato | cytosol | 16.34 | 21.57 |
| Solyc02g030620.1.1 | Tomato | cytosol | 15.59 | 21.28 |
| Solyc02g066900.1.1 | Tomato | cytosol | 15.59 | 19.87 |
| Solyc01g058740.2.1 | Tomato | cytosol | 3.47 | 19.72 |
| CDX74054 | Canola | nucleus | 13.86 | 19.44 |
| Bra001242.1-P | Field mustard | nucleus | 13.86 | 19.44 |
| KRH03141 | Soybean | nucleus | 11.14 | 19.15 |
| Solyc02g066890.1.1 | Tomato | cytosol | 16.83 | 18.94 |
| PGSC0003DMT400051959 | Potato | nucleus | 11.88 | 18.68 |
| Solyc02g066840.1.1 | Tomato | cytosol | 6.93 | 18.67 |
| CDY08008 | Canola | cytosol | 13.12 | 18.47 |
| AT3G07255.1 | Thale cress | nucleus | 13.37 | 18.43 |
| Solyc02g032720.1.1 | Tomato | cytosol | 15.84 | 17.3 |
| KRH07456 | Soybean | nucleus | 14.6 | 16.86 |
| Bra040367.1-P | Field mustard | nucleus | 11.63 | 16.85 |
| VIT_00s0216g00060.t01 | Wine grape | nucleus | 14.85 | 16.76 |
| KRH66123 | Soybean | nucleus | 14.6 | 16.67 |
| CDY34910 | Canola | peroxisome | 11.39 | 16.49 |
| VIT_17s0000g05280.t01 | Wine grape | nucleus | 15.59 | 14.75 |
| PGSC0003DMT400036545 | Potato | nucleus | 17.33 | 14.31 |
| PGSC0003DMT400091590 | Potato | cytosol | 13.86 | 13.73 |
| Solyc02g030600.1.1 | Tomato | cytosol | 6.19 | 11.96 |
Protein Annotations
| EnsemblPlants:HORVU4Hr1G067930.1 | EnsemblPlantsGene:HORVU4Hr1G067930 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0009987 |
| InterPro:Jas | InterPro:Ninja_fam | InterPro:Ninja_motif | PANTHER:PTHR31413 | PANTHER:PTHR31413:SF6 | PFAM:PF07897 |
| PFAM:PF16135 | SEG:seg | UniParc:UPI000B4774D8 | UniProt:A0A287PGY2 | MapMan:15.5.53.3 | : |
Description
No Description!
Coordinates
chrchr4H:+:563998200..564006623
Molecular Weight (calculated)
42234.7 Da
IEP (calculated)
9.627
GRAVY (calculated)
-0.577
Length
404 amino acids
Sequence
(BLAST)
(BLAST)
001: MEAYSRDLLR GLGGGDEAGR GEEKPRRLDS QAEEVELSLG LSLGGRFGQE RRRGEGLARS SSVACIQQAA LAPPALGRTN SLPTMAEAEA GNDPASPRSG
101: AEVQPQGSGA PLNGVVAEPA ALPRASLSPS PGSSDGQGKL RASLSPPSTG SSDGQGTITR TSSLPAGIED GWRKRKLAHT LEKLGMKRRI ETMNSSNVSG
201: EDIGEKVENY DDPSMKSEQA GGMPKVQRMN HSNVRRRSSG LPPPYQPPAA SQRSCLPGNP RRQNSALKGT PGAPERSLSS AVLPSSEGAK STAVTTSSSS
301: ASAVRAASLV ISKGEQQDGS ERTAARASAA DMMVRKMPPV YTSGLPNCER IDGFLYQYSR VDEVRIVCVC HGSFLTPTEF VAHAGGGKVA NPMRHIVVNP
401: PSSL
101: AEVQPQGSGA PLNGVVAEPA ALPRASLSPS PGSSDGQGKL RASLSPPSTG SSDGQGTITR TSSLPAGIED GWRKRKLAHT LEKLGMKRRI ETMNSSNVSG
201: EDIGEKVENY DDPSMKSEQA GGMPKVQRMN HSNVRRRSSG LPPPYQPPAA SQRSCLPGNP RRQNSALKGT PGAPERSLSS AVLPSSEGAK STAVTTSSSS
301: ASAVRAASLV ISKGEQQDGS ERTAARASAA DMMVRKMPPV YTSGLPNCER IDGFLYQYSR VDEVRIVCVC HGSFLTPTEF VAHAGGGKVA NPMRHIVVNP
401: PSSL
001: MAEANERSKE MARSNSCVFP RDLLQRFISN SVEGEDDDEE EDDDEIELNL GLSLGGRFGV DKSNKLVRSS SVVVTMPLFR EDHHHHQAAA MITTKVSTET
101: VAGATRGTGL MRTTSLPAES EEEWRKRKEM QTLRRMAAKR RRSEKLRTGV GGGNSNNPEE AATATASRRR GRPSSGLPRW SATANKSGLL RQHSAGLDSL
201: QVSGESLGGG RAAGSSSSVS ELETKASSDE ARSLPSTTQP QQETTTKPTN RLRRLSSVDM NMKMEPQGKG KSEMPCVFTK GDGPNGKRVD GILYRYGSGE
301: EVRIMCVCHG DFLSPADFVK HAGGPHVDHP LRHIVVNTSS PSNLL
101: VAGATRGTGL MRTTSLPAES EEEWRKRKEM QTLRRMAAKR RRSEKLRTGV GGGNSNNPEE AATATASRRR GRPSSGLPRW SATANKSGLL RQHSAGLDSL
201: QVSGESLGGG RAAGSSSSVS ELETKASSDE ARSLPSTTQP QQETTTKPTN RLRRLSSVDM NMKMEPQGKG KSEMPCVFTK GDGPNGKRVD GILYRYGSGE
301: EVRIMCVCHG DFLSPADFVK HAGGPHVDHP LRHIVVNTSS PSNLL
Arabidopsis Description
AFP1Ninja-family protein AFP1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LQ98]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.