Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra001242.1-P | Field mustard | nucleus | 98.26 | 98.26 |
| CDY08008 | Canola | cytosol | 81.25 | 81.53 |
| Solyc06g083290.1.1 | Tomato | cytosol, extracellular, plastid | 14.24 | 60.29 |
| AT3G07255.1 | Thale cress | nucleus | 53.47 | 52.56 |
| CDY34910 | Canola | peroxisome | 49.31 | 50.9 |
| GSMUA_Achr4P32830_001 | Banana | nucleus | 15.62 | 33.09 |
| HORVU4Hr1G035770.1 | Barley | plastid | 11.81 | 30.63 |
| CDX85274 | Canola | nucleus | 26.74 | 29.06 |
| CDX86364 | Canola | nucleus | 26.74 | 28.84 |
| CDY00093 | Canola | nucleus | 25.35 | 28.74 |
| CDY19988 | Canola | nucleus | 25.35 | 28.63 |
| CDY44386 | Canola | nucleus | 23.26 | 26.69 |
| CDY04085 | Canola | nucleus | 22.57 | 26.1 |
| PGSC0003DMT400051959 | Potato | nucleus | 22.57 | 25.29 |
| TraesCS3D01G532000.1 | Wheat | nucleus | 14.58 | 24.71 |
| CDY43256 | Canola | mitochondrion | 22.22 | 22.86 |
| CDY68672 | Canola | cytosol, mitochondrion, nucleus, plastid | 21.88 | 22.83 |
| CDX74273 | Canola | mitochondrion | 21.18 | 22.34 |
| CDY33807 | Canola | nucleus | 23.96 | 22.33 |
| GSMUA_Achr5P01470_001 | Banana | nucleus | 22.22 | 22.3 |
| CDY36406 | Canola | nucleus | 22.57 | 22.26 |
| CDX91976 | Canola | mitochondrion | 21.88 | 22.11 |
| CDY16104 | Canola | nucleus | 23.61 | 22.01 |
| TraesCS4B01G246800.1 | Wheat | nucleus | 18.4 | 21.9 |
| GSMUA_Achr6P34980_001 | Banana | cytosol | 21.18 | 21.55 |
| KRH07456 | Soybean | nucleus | 26.04 | 21.43 |
| TraesCS4A01G058100.1 | Wheat | nucleus | 18.06 | 21.14 |
| TraesCS3B01G594200.1 | Wheat | cytosol | 16.32 | 20.8 |
| KRH66123 | Soybean | nucleus | 25.35 | 20.62 |
| GSMUA_Achr9P09330_001 | Banana | nucleus | 23.61 | 20.12 |
| VIT_00s0216g00060.t01 | Wine grape | nucleus | 25.0 | 20.11 |
| CDX95951 | Canola | nucleus | 23.26 | 19.94 |
| TraesCS4D01G246100.2 | Wheat | nucleus | 17.36 | 19.92 |
| CDY04272 | Canola | nucleus | 23.61 | 19.65 |
| CDX98125 | Canola | nucleus | 21.18 | 19.12 |
| CDY07354 | Canola | nucleus | 22.92 | 19.02 |
| CDY40905 | Canola | nucleus | 22.57 | 18.62 |
| Os03t0214200-01 | Rice | nucleus | 23.26 | 16.71 |
| Zm00001d048085_P002 | Maize | nucleus | 22.57 | 16.54 |
| EER92642 | Sorghum | nucleus | 21.18 | 15.48 |
| EER89528 | Sorghum | nucleus | 18.75 | 15.13 |
| TraesCS4D01G246400.1 | Wheat | nucleus | 19.79 | 14.39 |
| HORVU4Hr1G067930.1 | Barley | nucleus | 19.44 | 13.86 |
| TraesCS4B01G247000.1 | Wheat | nucleus | 18.75 | 13.64 |
| TraesCS4A01G057800.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 19.79 | 11.15 |
Protein Annotations
| EnsemblPlants:CDX74054 | EnsemblPlantsGene:GSBRNA2T00111800001 | GO:A0A078CD01 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 |
| GO:GO:0009987 | InterPro:Jas | InterPro:Ninja_fam | InterPro:Ninja_motif | PANTHER:PTHR31413 | PFAM:PF07897 |
| PFAM:PF16135 | ProteinID:CDX74054 | ProteinID:CDX74054.1 | SEG:seg | UniParc:UPI0004EF4D7A | MapMan:15.5.53.3 |
Description
BnaA03g29930D
Coordinates
chrLK031800:+:1101352..1102823
Molecular Weight (calculated)
30695.0 Da
IEP (calculated)
5.777
GRAVY (calculated)
-0.561
Length
288 amino acids
Sequence
(BLAST)
(BLAST)
001: MVVESSSMAT KIGKDEDVEV ELELCLSLGG PFKKSDKAII MRCANDIGVD LNDGTTTYEV KETWKKREAK QQQRSRGEGG ECKRIKTECK KATNGVDLGL
101: SFGDMGNGYG SGRYKENSKD VTIGSPISST SDVSDPSSSP CQEGGTSELG ENPDQTKPVR FPVNNTLTGT EGTVRITDGP NDAVVEETQE CSNSIAKETG
201: KPPKPRPCSN GVNGSLLPFA KMPCVTSTGN GPDGKTVNGF LYRYSKSEIS IICVCHGTSF SPAEFIIHAG GTHVSNPLRH ITVVPSTF
101: SFGDMGNGYG SGRYKENSKD VTIGSPISST SDVSDPSSSP CQEGGTSELG ENPDQTKPVR FPVNNTLTGT EGTVRITDGP NDAVVEETQE CSNSIAKETG
201: KPPKPRPCSN GVNGSLLPFA KMPCVTSTGN GPDGKTVNGF LYRYSKSEIS IICVCHGTSF SPAEFIIHAG GTHVSNPLRH ITVVPSTF
001: MFVESLSMAE KFVEDENVEV ELELELCLSL GGPFKKTEKS KTFGQSNAVG FEKDNGVNLD GRTTNVTRIK ETRKKREAKQ QQRSGEEGEC KRIRTEYNGV
101: SNGDDMDLSS INMCNGYGSG RLKESSKDVT IGSPICTSSS VSDPSSSSRQ EGGSGDIGAQ SGQTKQVRSP VNNILTGTEQ TVHNTDGSKD AETQEWSNSS
201: VTKESGKPPK PHTNSNGNGS LLPFAQMPCV TSTGNGPEGK TVNGFLYRYS KSEISIICVC HGTSFSPAEF IVHAGGTNVS HPLRHITVVP STL
101: SNGDDMDLSS INMCNGYGSG RLKESSKDVT IGSPICTSSS VSDPSSSSRQ EGGSGDIGAQ SGQTKQVRSP VNNILTGTEQ TVHNTDGSKD AETQEWSNSS
201: VTKESGKPPK PHTNSNGNGS LLPFAQMPCV TSTGNGPEGK TVNGFLYRYS KSEISIICVC HGTSFSPAEF IVHAGGTNVS HPLRHITVVP STL
Arabidopsis Description
Nuclear transport factor 2/RNA recognition motif protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LNF2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.