Factsheet for VIT_00s0216g00060.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g083290.1.1	Tomato	cytosol, extracellular, plastid	13.41	70.59
Bra027018.1-P	Field mustard	cytosol	11.45	69.49
GSMUA_Achr4P32830_001	Banana	nucleus	15.08	39.71
HORVU4Hr1G035770.1	Barley	plastid	10.89	35.14
TraesCS3D01G532000.1	Wheat	nucleus	12.85	27.06
CDY34910	Canola	peroxisome	20.67	26.52
Bra040367.1-P	Field mustard	nucleus	20.39	26.16
CDY08008	Canola	cytosol	20.67	25.78
AT3G07255.1	Thale cress	nucleus	20.67	25.26
Bra001242.1-P	Field mustard	nucleus	20.11	25.0
CDX74054	Canola	nucleus	20.11	25.0
PGSC0003DMT400051959	Potato	nucleus	17.88	24.9
KRH66123	Soybean	nucleus	23.18	23.45
KRH07456	Soybean	nucleus	22.63	23.14
TraesCS4A01G058100.1	Wheat	nucleus	15.64	22.76
TraesCS4B01G246800.1	Wheat	nucleus	15.36	22.73
TraesCS3B01G594200.1	Wheat	cytosol	14.25	22.57
GSMUA_Achr9P09330_001	Banana	nucleus	21.23	22.49
GSMUA_Achr6P34980_001	Banana	cytosol	17.6	22.26
GSMUA_Achr5P01470_001	Banana	nucleus	17.6	21.95
VIT_01s0011g00410.t01	Wine grape	nucleus	20.39	20.28
TraesCS4D01G246100.2	Wheat	nucleus	13.97	19.92
VIT_14s0068g00300.t01	Wine grape	nucleus	20.39	18.86
Zm00001d048085_P002	Maize	nucleus	20.67	18.83
TraesCS4D01G246400.1	Wheat	nucleus	20.39	18.43
TraesCS4B01G247000.1	Wheat	nucleus	19.83	17.93
EER92642	Sorghum	nucleus	19.55	17.77
Os03t0214200-01	Rice	nucleus	19.83	17.71
EER89528	Sorghum	nucleus	17.32	17.37
HORVU4Hr1G067930.1	Barley	nucleus	16.76	14.85
TraesCS4A01G057800.1	Wheat	cytosol, mitochondrion, nucleus, plastid	20.11	14.09
VIT_17s0000g05280.t01	Wine grape	nucleus	15.64	13.11

Protein Annotations

EntrezGene:100265755	wikigene:100265755	MapMan:15.5.53.3	ProteinID:CCB50000	ProteinID:CCB50000.1	ncoils:Coil
UniProt:F6HCQ5	EMBL:FN595519	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	GO:GO:0006139
GO:GO:0006259	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0015074	InterPro:Jas	EntrezGene:LOC100265755	wikigene:LOC100265755	InterPro:Ninja_fam	PFAM:PF16135
PANTHER:PTHR31413	PANTHER:PTHR31413:SF11	UniParc:UPI00021095E0	ArrayExpress:VIT_00s0216g00060	EnsemblPlantsGene:VIT_00s0216g00060	EnsemblPlants:VIT_00s0216g00060.t01
unigene:Vvi.22744	RefSeq:XP_002271712	RefSeq:XP_002271712.2	SEG:seg	:	:

Description

No Description!

Coordinates

chrUn:-:13861091..13862649

Molecular Weight (calculated)

38882.6 Da

IEP (calculated)

9.918

GRAVY (calculated)

-0.811

Length

358 amino acids

Sequence
(BLAST)

001: MEVDLELSVG GSFRNLETSK PKIDSKLELC SCSRSEDAKA KREIQALRRQ EAKKKREKKK GMRNGGGVGD ERMRLEAQRL QNRVKDRERR ENNEANLTHH
101: KSYINHRNHG IVEGPIQMMV PIKYAHPSKV QYVPLAFPCV VPCGAPATWL QPVKSLPVRQ GCGGRSVLSD GWTNSSASVS HQDSGSSDIG SLSSHTRTAP
201: PQSSEAQGQS EHSVSSYQKD SSQGTRSDKS TSFGEKVSTP VKDPTTRRNS STGESPPSPL KKARDGNGDL GEPPKPRNQN HHPSAPSLEQ MPCVSTTGNG
301: PNGKTITGFL YRYTKAEISI VCVCHGSSFS PAGFVEHAGG IDVSHPLRHI TVIPSAFA

Best Arabidopsis Sequence Match ( AT3G07255.1 )
(BLAST)

001: MFVESLSMAE KFVEDENVEV ELELELCLSL GGPFKKTEKS KTFGQSNAVG FEKDNGVNLD GRTTNVTRIK ETRKKREAKQ QQRSGEEGEC KRIRTEYNGV
101: SNGDDMDLSS INMCNGYGSG RLKESSKDVT IGSPICTSSS VSDPSSSSRQ EGGSGDIGAQ SGQTKQVRSP VNNILTGTEQ TVHNTDGSKD AETQEWSNSS
201: VTKESGKPPK PHTNSNGNGS LLPFAQMPCV TSTGNGPEGK TVNGFLYRYS KSEISIICVC HGTSFSPAEF IVHAGGTNVS HPLRHITVVP STL

Arabidopsis Description

Nuclear transport factor 2/RNA recognition motif protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LNF2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.