Factsheet for VIT_17s0000g05280.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P32830_001	Banana	nucleus	11.01	34.56
Solyc02g032140.1.1	Tomato	cytosol	9.13	31.45
HORVU4Hr1G035770.1	Barley	plastid	7.73	29.73
KRH54707	Soybean	nucleus	14.75	25.3
TraesCS3D01G532000.1	Wheat	nucleus	9.84	24.71
KRH63223	Soybean	nucleus	14.52	23.85
KRH03141	Soybean	nucleus	12.88	23.4
TraesCS4D01G246100.2	Wheat	nucleus	13.11	22.31
GSMUA_Achr5P01470_001	Banana	nucleus	14.99	22.3
VIT_01s0011g00410.t01	Wine grape	nucleus	17.33	20.56
GSMUA_Achr9P09330_001	Banana	nucleus	16.16	20.41
KRH56804	Soybean	nucleus	13.11	19.86
GSMUA_Achr6P34980_001	Banana	cytosol	13.11	19.79
TraesCS4A01G058100.1	Wheat	nucleus	11.24	19.51
TraesCS4B01G246800.1	Wheat	nucleus	11.01	19.42
TraesCS3B01G594200.1	Wheat	cytosol	10.07	19.03
Zm00001d048085_P002	Maize	nucleus	15.22	16.54
VIT_14s0068g00300.t01	Wine grape	nucleus	14.99	16.54
EER89528	Sorghum	nucleus	13.82	16.53
TraesCS4B01G247000.1	Wheat	nucleus	15.22	16.41
TraesCS4D01G246400.1	Wheat	nucleus	15.22	16.41
VIT_00s0216g00060.t01	Wine grape	nucleus	13.11	15.64
HORVU4Hr1G067930.1	Barley	nucleus	14.75	15.59
EER92642	Sorghum	nucleus	14.05	15.23
Os03t0214200-01	Rice	nucleus	14.29	15.21
PGSC0003DMT400091590	Potato	cytosol	13.35	13.97
TraesCS4A01G057800.1	Wheat	cytosol, mitochondrion, nucleus, plastid	14.75	12.33

Protein Annotations

EntrezGene:100265622	wikigene:100265622	EntrezGene:104882322	MapMan:15.5.53.3	ProteinID:CCB43138	ProteinID:CCB43138.1
UniProt:F6GTC9	EMBL:FN594950	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0009987
InterPro:Jas	EntrezGene:LOC100265622	wikigene:LOC100265622	InterPro:Ninja_fam	PFAM:PF16135	PANTHER:PTHR31413
PANTHER:PTHR31413:SF10	UniParc:UPI000210A2EB	ArrayExpress:VIT_17s0000g05280	EnsemblPlantsGene:VIT_17s0000g05280	EnsemblPlants:VIT_17s0000g05280.t01	unigene:Vvi.4821
RefSeq:XP_002265769	RefSeq:XP_002265769.1	RefSeq:XP_010663438.1	RefSeq:XP_010663439.1	RefSeq:XP_010663440.1	RefSeq:XP_010663441.1
RefSeq:XP_010663443.1	RefSeq:XP_010663444.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr17:+:5767356..5770494

Molecular Weight (calculated)

46286.2 Da

IEP (calculated)

7.888

GRAVY (calculated)

-0.369

Length

427 amino acids

Sequence
(BLAST)

001: MAGTSKDGMY GIHDYFMQSD ERQKNGAGDS VSDSGCNLEL TLGGSYGDFD DEMPVLTLSS SVFESDTMEE DSGEPNVPPP AEFAVEGSFL SLGMSLPPPV
101: LEMKTMKELQ TMRRQEVKKR LMGKNRNRGR PPLPNQSQTR VLLPAVFQLA PPSKTVPPSS PPLLQPLCPT PMSFRLPTPI SPPLKPSSPP LSPTPLSFYM
201: PPPPPTPSTS SPPLSPRPLS FRLPTPTPPP PPPPPPQHSS LPLCPMPLSI LPPHRQSSSP PLSPIPLSFR LPLPAPHSPS ELSPLVSDPA PPTLLPPVPT
301: HPHFPAKGEG HKMAIPVEPE SLPVDILRAL VVRWLLQHKY KRPRASDRSD RETGLELIKQ MPTVVTTGAG PNGKRIEGFL YKFGTGQISL VCICHGMFFT
401: PAEFVRHAGG DDVENPMKQI IVCPASF

Best Arabidopsis Sequence Match ( AT3G29575.3 )
(BLAST)

001: MSKKQRLSEE DGEVEIELDL GLSLNGRFGV DPLAKTRLMR STSVLDLVVN DRSGLSRTCS LPVETEEEWR KRKELQSLRR LEAKRKRSEK QRKHKACGGE
101: EKVVEEGSIG SSGSGSSGLS EVDTLLPPVQ ATTNKSVETS PSSAQSQPEN LGKEASQNII EDMPFVSTTG DGPNGKKING FLYRYRKGEE VRIVCVCHGS
201: FLSPAEFVKH AGGGDVAHPL KHIVVNPSPF L

Arabidopsis Description

AFP3Ninja-family protein AFP3 [Source:UniProtKB/Swiss-Prot;Acc:Q94F39]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.