CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH56804	Soybean	nucleus	51.49	42.91
Solyc02g032140.1.1	Tomato	cytosol	14.47	27.42
KRH54707	Soybean	nucleus	28.09	26.51
GSMUA_Achr4P32830_001	Banana	nucleus	15.32	26.47
KRH63223	Soybean	nucleus	28.94	26.15
HORVU4Hr1G035770.1	Barley	plastid	11.91	25.23
TraesCS3B01G594200.1	Wheat	cytosol	18.72	19.47
TraesCS3D01G532000.1	Wheat	nucleus	13.62	18.82
TraesCS4A01G058100.1	Wheat	nucleus	17.87	17.07
GSMUA_Achr6P34980_001	Banana	cytosol	20.43	16.96
TraesCS4D01G246100.2	Wheat	nucleus	17.87	16.73
TraesCS4B01G246800.1	Wheat	nucleus	17.02	16.53
GSMUA_Achr9P09330_001	Banana	nucleus	22.55	15.68
GSMUA_Achr5P01470_001	Banana	nucleus	18.72	15.33
KRH01286	Soybean	nucleus	23.83	14.85
KRH66123	Soybean	nucleus	21.28	14.12
KRH45047	Soybean	nucleus	22.55	13.84
KRH70923	Soybean	nucleus	22.98	13.14
VIT_17s0000g05280.t01	Wine grape	nucleus	23.4	12.88
TraesCS4B01G247000.1	Wheat	nucleus	21.28	12.63
KRH07456	Soybean	nucleus	18.72	12.57
KRH75067	Soybean	nucleus	21.7	12.53
PGSC0003DMT400091590	Potato	cytosol	21.28	12.25
TraesCS4D01G246400.1	Wheat	nucleus	20.43	12.12
Os03t0214200-01	Rice	nucleus	20.0	11.72
HORVU4Hr1G067930.1	Barley	nucleus	19.15	11.14
EER89528	Sorghum	nucleus	16.6	10.92
Zm00001d048085_P002	Maize	nucleus	17.87	10.69
EER92642	Sorghum	nucleus	17.87	10.66
TraesCS4A01G057800.1	Wheat	cytosol, mitochondrion, nucleus, plastid	20.43	9.39

Protein Annotations

EMBL:ACUP02010335	EnsemblPlants:KRH03141	EnsemblPlantsGene:GLYMA_17G079000	EntrezGene:102669086	GO:GO:0007154	GO:GO:0007165
GO:GO:0008150	GO:GO:0009987	InterPro:Jas	InterPro:Ninja_fam	ncoils:Coil	PANTHER:PTHR31413
PANTHER:PTHR31413:SF10	PFAM:PF16135	ProteinID:KRH03141	ProteinID:KRH03141.1	SEG:seg	UniParc:UPI0003DE873A
UniProt:A0A0R0FKZ1	MapMan:15.5.53.3	:	:	:	:

Description

hypothetical protein

Coordinates

chr17:-:6146161..6147766

Molecular Weight (calculated)

26148.1 Da

IEP (calculated)

5.380

GRAVY (calculated)

-0.527

Length

235 amino acids

Sequence
(BLAST)

001: MASPFSSWIS MEEQGFYSKK PYTYTNSEHI DLTLKLSPCG QNAEEEEEEE EEEEEKMVEK GLVRFGDLQT MRRVKTWKRL LMKKMRMAAA KEAEKSLPVS
101: PGGGAQTLPH SIYNSLKTFA NPCGDAWHEG AMQEMTLWPS ETMIENERPA KKLKHVNSYQ ESDAMPSVIT TGDGTITGKR TVCIVCVCHG SFPSPTEFVM
201: HAGGKEVADP MKHITVCSDS FGINGDGAAF ITHPF

Best Arabidopsis Sequence Match ( AT3G29575.1 )
(BLAST)

001: MSKKQRLSEE DGEVEIELDL GLSLNGRFGV DPLAKTRLMR STSVLDLVVN DRSGLSRTCS LPVETEEEWR KRKELQSLRR LEAKRKRSEK QRKHKACGGE
101: EKVVEEGSIG SSGSGSSGLS EVDTLLPPVQ ATTNKSVETS PSSAQSQPEN LGKEASQNII EDMPFVSTTG DGPNGKKING FLYRYRKGEE VRIVCVCHGS
201: FLSPAEFVKH AGGGDVAHPL KHIVVNPSPF L

Arabidopsis Description

AFP3Ninja-family protein AFP3 [Source:UniProtKB/Swiss-Prot;Acc:Q94F39]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.