CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH63223	Soybean	nucleus	53.41	51.15
GSMUA_Achr4P32830_001	Banana	nucleus	20.48	37.5
HORVU4Hr1G035770.1	Barley	plastid	15.26	34.23
Solyc02g032140.1.1	Tomato	cytosol	15.66	31.45
KRH56804	Soybean	nucleus	34.14	30.14
TraesCS3D01G532000.1	Wheat	nucleus	20.08	29.41
KRH03141	Soybean	nucleus	26.51	28.09
TraesCS3B01G594200.1	Wheat	cytosol	23.69	26.11
GSMUA_Achr9P09330_001	Banana	nucleus	30.92	22.78
TraesCS4B01G246800.1	Wheat	nucleus	22.09	22.73
GSMUA_Achr5P01470_001	Banana	nucleus	25.3	21.95
TraesCS4D01G246100.2	Wheat	nucleus	21.29	21.12
GSMUA_Achr6P34980_001	Banana	cytosol	23.69	20.85
TraesCS4A01G058100.1	Wheat	nucleus	20.08	20.33
KRH01286	Soybean	nucleus	30.12	19.89
KRH70923	Soybean	nucleus	31.33	18.98
KRH75067	Soybean	nucleus	30.92	18.92
KRH45047	Soybean	nucleus	28.11	18.28
TraesCS4B01G247000.1	Wheat	nucleus	27.71	17.42
TraesCS4D01G246400.1	Wheat	nucleus	27.71	17.42
Os03t0214200-01	Rice	nucleus	27.71	17.21
EER89528	Sorghum	nucleus	24.1	16.81
EER92642	Sorghum	nucleus	26.1	16.5
Zm00001d048085_P002	Maize	nucleus	25.7	16.29
HORVU4Hr1G067930.1	Barley	nucleus	26.1	16.09
KRH66123	Soybean	nucleus	21.69	15.25
VIT_17s0000g05280.t01	Wine grape	nucleus	25.3	14.75
PGSC0003DMT400091590	Potato	cytosol	24.1	14.71
KRH07456	Soybean	nucleus	20.48	14.57
TraesCS4A01G057800.1	Wheat	cytosol, mitochondrion, nucleus, plastid	28.11	13.7

Protein Annotations

EMBL:ACUP02003567	EnsemblPlants:KRH54707	EnsemblPlantsGene:GLYMA_06G204100	EntrezGene:100814728	GO:GO:0007154	GO:GO:0007165
GO:GO:0008150	GO:GO:0009987	InterPro:Jas	InterPro:Ninja_fam	PANTHER:PTHR31413	PANTHER:PTHR31413:SF10
PFAM:PF16135	ProteinID:KRH54707	ProteinID:KRH54707.1	ProteinID:KRH54708.1	ProteinID:KRH54709.1	SEG:seg
UniParc:UPI0002339756	UniProt:I1KD19	MapMan:15.5.53.3	:	:	:

Description

hypothetical protein

Coordinates

chr6:-:19156547..19160455

Molecular Weight (calculated)

26762.9 Da

IEP (calculated)

9.901

GRAVY (calculated)

-0.501

Length

249 amino acids

Sequence
(BLAST)

001: MERCYNEKEY KSKKIDLTLK LSPCGENAEE KERGLRRSSS SSLVVVGVAN GAQWGTSLGR SCSLPAERQR RVAALSPQVL AWVAASSAVN VNNTSSSLHK
101: PNPLPSSSQD SGLQGPTHAA KGVALNIQTS TKEENDSKAS HKTIAKAISP RPADSKPENP AKKHKLGNYC SLKGDVMEIL RQMPSVTTTG DGPNGKRIEG
201: FLYKYRSGQV CIVCVCHGNF LTPAEFVMHA GGKEVANPMK HITVLSNSF

Best Arabidopsis Sequence Match ( AT3G29575.1 )
(BLAST)

001: MSKKQRLSEE DGEVEIELDL GLSLNGRFGV DPLAKTRLMR STSVLDLVVN DRSGLSRTCS LPVETEEEWR KRKELQSLRR LEAKRKRSEK QRKHKACGGE
101: EKVVEEGSIG SSGSGSSGLS EVDTLLPPVQ ATTNKSVETS PSSAQSQPEN LGKEASQNII EDMPFVSTTG DGPNGKKING FLYRYRKGEE VRIVCVCHGS
201: FLSPAEFVKH AGGGDVAHPL KHIVVNPSPF L

Arabidopsis Description

AFP3Ninja-family protein AFP3 [Source:UniProtKB/Swiss-Prot;Acc:Q94F39]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.