CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG94206
KRG94991
KRH01286
KRH22688
KRH26633
KRH37750
KRH45047
KRH57716
KRH64894
KRH70923
KRH75067

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G02140.1	KRH70923	AT1G13740.1	18484180
AT3G02140.1	KRH75067	AT1G13740.1	18484180
AT3G02140.1	KRH70923	AT1G69260.1	18484180
AT3G02140.1	KRH75067	AT1G69260.1	18484180
AT3G02140.1	KRH01286	AT3G02140.1	18484180
AT3G02140.1	KRH45047	AT3G02140.1	18484180
AT3G02140.1	KRH22688	AT3G44460.1	18484180
AT3G02140.1	KRH26633	AT3G44460.1	18484180
AT3G02140.1	KRH37750	AT3G44460.1	18484180
AT3G02140.1	KRG94206	AT3G56850.1	18484180
AT3G02140.1	KRG94991	AT3G56850.1	18484180
AT3G02140.1	KRH57716	AT3G56850.1	18484180
AT3G02140.1	KRH64894	AT3G56850.1	18484180
AT3G29575.1	KRH70923	AT1G13740.1	18484180
AT3G29575.1	KRH75067	AT1G13740.1	18484180
AT3G29575.1	KRH70923	AT1G69260.1	18484180
AT3G29575.1	KRH75067	AT1G69260.1	18484180
AT3G29575.1	KRH01286	AT3G29575.1	18484180
AT3G29575.1	KRH45047	AT3G29575.1	18484180
AT3G29575.1	KRH22688	AT3G44460.1	18484180
AT3G29575.1	KRH26633	AT3G44460.1	18484180
AT3G29575.1	KRH37750	AT3G44460.1	18484180
AT3G29575.1	KRG94206	AT3G56850.1	18484180
AT3G29575.1	KRG94991	AT3G56850.1	18484180
AT3G29575.1	KRH57716	AT3G56850.1	18484180
AT3G29575.1	KRH64894	AT3G56850.1	18484180
AT3G29575.1	KRG94206	AT3G56850.1	21798944
AT3G29575.1	KRG94991	AT3G56850.1	21798944
AT3G29575.1	KRH57716	AT3G56850.1	21798944
AT3G29575.1	KRH64894	AT3G56850.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH45047	Soybean	nucleus	76.39	75.2
Solyc02g066850.1.1	Tomato	cytosol	12.2	69.7
GSMUA_Achr4P32830_001	Banana	nucleus	20.16	55.88
AT3G29575.1	Thale cress	nucleus	33.16	54.11
CDY00093	Canola	nucleus	36.07	53.54
Bra036210.1-P	Field mustard	nucleus	35.54	52.55
CDY19988	Canola	nucleus	35.54	52.55
CDY04085	Canola	nucleus	32.89	49.8
CDY44386	Canola	nucleus	32.89	49.4
Bra025400.1-P	Field mustard	nucleus	34.75	49.06
CDX86364	Canola	nucleus	34.75	49.06
CDX85274	Canola	nucleus	34.48	49.06
Bra033105.1-P	Field mustard	nucleus	25.73	44.5
PGSC0003DMT400036544	Potato	cytosol	14.59	43.31
Solyc02g088910.2.1	Tomato	nucleus	36.07	42.9
PGSC0003DMT400003712	Potato	nucleus	34.75	41.72
Solyc02g032680.1.1	Tomato	cytosol	12.47	39.17
HORVU4Hr1G035770.1	Barley	plastid	11.14	37.84
GSMUA_Achr9P09330_001	Banana	nucleus	33.16	36.98
Solyc02g066860.1.1	Tomato	cytosol	12.73	36.92
VIT_14s0068g00300.t01	Wine grape	nucleus	37.67	36.69
Solyc02g032690.1.1	Tomato	cytosol	22.81	35.83
Solyc02g032710.1.1	Tomato	cytosol	12.73	35.56
Solyc02g030650.1.1	Tomato	nucleus	16.98	35.56
GSMUA_Achr5P01470_001	Banana	nucleus	26.53	34.84
CDX74273	Canola	mitochondrion	24.93	34.43
PGSC0003DMT400089614	Potato	cytosol	12.2	33.82
Bra001031.1-P	Field mustard	mitochondrion	24.4	33.7
GSMUA_Achr6P34980_001	Banana	cytosol	25.2	33.57
TraesCS3D01G532000.1	Wheat	nucleus	15.12	33.53
KRH75067	Soybean	nucleus	36.07	33.42
Solyc02g066870.1.1	Tomato	cytosol	13.79	33.12
KRH70923	Soybean	nucleus	36.07	33.09
Bra039157.1-P	Field mustard	cytosol	23.87	32.49
CDX91976	Canola	mitochondrion	24.4	32.28
CDY68672	Canola	cytosol, mitochondrion, nucleus, plastid	23.61	32.25
Solyc02g032670.1.1	Tomato	cytosol	22.02	31.68
PGSC0003DMT400095238	Potato	cytosol, mitochondrion	10.61	31.5
TraesCS3B01G594200.1	Wheat	cytosol	18.83	31.42
Solyc02g030610.1.1	Tomato	cytosol	13.0	30.62
CDY43256	Canola	mitochondrion	22.55	30.36
KRH54707	Soybean	nucleus	19.89	30.12
Os03t0214200-01	Rice	nucleus	31.57	29.68
KRH63223	Soybean	nucleus	20.16	29.23
Solyc02g030630.1.1	Tomato	cytosol	23.61	29.09
Solyc02g030620.1.1	Tomato	cytosol	22.55	28.72
TraesCS4B01G246800.1	Wheat	nucleus	18.04	28.1
EER89528	Sorghum	nucleus	25.73	27.17
AT3G02140.1	Thale cress	cytosol	22.81	26.96
Solyc01g058740.2.1	Tomato	cytosol	5.04	26.76
TraesCS4A01G058100.1	Wheat	nucleus	16.98	26.02
EER92642	Sorghum	nucleus	27.06	25.89
TraesCS4D01G246100.2	Wheat	nucleus	16.98	25.5
TraesCS4B01G247000.1	Wheat	nucleus	26.53	25.25
Zm00001d048085_P002	Maize	nucleus	26.26	25.19
TraesCS4D01G246400.1	Wheat	nucleus	26.26	25.0
Solyc02g066900.1.1	Tomato	cytosol	20.16	23.97
KRH03141	Soybean	nucleus	14.85	23.83
Solyc02g066890.1.1	Tomato	cytosol	22.02	23.12
KRH56804	Soybean	nucleus	16.71	22.34
KRH66123	Soybean	nucleus	20.95	22.32
KRH07456	Soybean	nucleus	20.42	22.0
HORVU4Hr1G067930.1	Barley	nucleus	23.34	21.78
Solyc02g066840.1.1	Tomato	cytosol	8.49	21.33
Solyc02g032720.1.1	Tomato	cytosol	20.16	20.54
TraesCS4A01G057800.1	Wheat	cytosol, mitochondrion, nucleus, plastid	26.79	19.77
PGSC0003DMT400036545	Potato	nucleus	24.67	19.02
Solyc02g030600.1.1	Tomato	cytosol	8.49	15.31

Protein Annotations

EntrezGene:100810536	MapMan:15.5.53.3	EMBL:ACUP02011510	ncoils:Coil	EnsemblPlantsGene:GLYMA_18G267200	GO:GO:0007154
GO:GO:0007165	GO:GO:0008150	GO:GO:0009987	UniProt:I1N4K4	InterPro:Jas	ProteinID:KRH01285.1
EnsemblPlants:KRH01286	ProteinID:KRH01286	ProteinID:KRH01286.1	InterPro:NINJA_B	InterPro:Ninja_fam	InterPro:Ninja_motif
PFAM:PF07897	PFAM:PF16135	PFAM:PF16136	PANTHER:PTHR31413	PANTHER:PTHR31413:SF6	UniParc:UPI00023D8228
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr18:-:55161119..55166101

Molecular Weight (calculated)

41123.5 Da

IEP (calculated)

8.147

GRAVY (calculated)

-0.733

Length

377 amino acids

Sequence
(BLAST)

001: MAEVEDIDNP HHDHHHYLSS STTQPPMINF PRDLLRTFVG VNNNNNNNSQ HHNLPMPVVK LEDEKEELEL SLGLSMNGRF GVDPTAKKIK RTTSIPEFVR
101: DEEMGYAAAM GCTGSLVRTC SLPTETEEEW RKRKELQTLR RVEARRKRSE KQRNMKALRE QQQRSEGSNP VEQGAGGYGE VAPPLARTVS LTARVCGLGL
201: NGDSEKEKKE KRSGIALPPP SPSQGSIGSS GISEAESQQG QGTTPMDVRS PTSANLLPDS ELKSPAGVAE NNTGKNAAAA AAVTMRSQSN KYSPPQSRTK
301: DIVRNLLEDM PCVSTKGDGP NGKRIEGFLY RYGKGEEVRI VCVCHGSFLT PSEFVKHAGG GDVANPLKHI VVSPSFL

Best Arabidopsis Sequence Match ( AT1G13740.1 )
(BLAST)

001: MGEASRQQRA WNREMTVTTN LSLDIDKYPR DLLRGFMSEN GGGRVFHGGE TNCDDESTIE LNLGLSLGGR FGVDKTPRKL KRSSSVLDTV PFNDSTVAEP
101: ENYTVGLERT TSLPAEMEEE WRKRKEMQSL RRMEAKRRRC EKQSFRVGNS DDQTVSFENE RWVTASKSGF LQRHLVSSNR QVCGVDSDGG GATGGGSSSS
201: LSELDNKNQQ GSSNSCNDER SPKIVAGCSS NSGSQGTERP SVTRANKVNE NENEKRVRSE DSVDRKGKGM ATSTGLVDMP CVFTKGDGPN GRRVDGILYK
301: YGKGEEVRIM CICHGSFLTP AEFVKHGGGG DVDRPLRHIV VNTSSSTF

Arabidopsis Description

AFP2AFP2 [Source:UniProtKB/TrEMBL;Acc:A0A178WBB1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.