CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG94206
KRG94991
KRH01286
KRH45047
KRH57716
KRH64894
KRH70923
KRH75067

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G44460.1	KRH70923	AT1G13740.1	18484180
AT3G44460.1	KRH75067	AT1G13740.1	18484180
AT3G44460.1	KRH70923	AT1G69260.1	18484180
AT3G44460.1	KRH75067	AT1G69260.1	18484180
AT3G44460.1	KRH01286	AT3G02140.1	18484180
AT3G44460.1	KRH45047	AT3G02140.1	18484180
AT3G44460.1	KRH01286	AT3G29575.1	18484180
AT3G44460.1	KRH45047	AT3G29575.1	18484180
AT3G44460.1	KRG94206	AT3G56850.1	21798944
AT3G44460.1	KRG94991	AT3G56850.1	21798944
AT3G44460.1	KRH57716	AT3G56850.1	21798944
AT3G44460.1	KRH64894	AT3G56850.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH22688	Soybean	nucleus	83.89	52.68
KRH26633	Soybean	mitochondrion	89.57	29.35
AT3G44460.1	Thale cress	nucleus	34.12	21.75
VIT_06s0080g00340.t01	Wine grape	nucleus	32.7	21.3
Bra019436.1-P	Field mustard	nucleus	32.7	20.54
CDY10500	Canola	nucleus	32.7	19.94
CDY08701	Canola	nucleus	32.23	19.65
KRG96191	Soybean	nucleus	35.55	19.38
KRH13203	Soybean	nucleus	27.01	18.87
Os01t0859300-01	Rice	nucleus	28.44	18.58
KRH56272	Soybean	nucleus	27.49	18.35
GSMUA_Achr8P07740_001	Banana	nucleus	29.38	17.87
Solyc09g009490.2.1	Tomato	nucleus	36.02	17.84
KRH62689	Soybean	nucleus	26.54	17.72
GSMUA_Achr3P22710_001	Banana	nucleus	28.91	17.38
KRH44714	Soybean	nucleus	26.54	17.34
KRH32737	Soybean	nucleus	36.49	17.23
KRG94206	Soybean	nucleus	26.07	17.13
KRH64894	Soybean	nucleus	25.59	17.09
PGSC0003DMT400006851	Potato	nucleus	34.6	17.06
KRG94991	Soybean	nucleus	25.59	16.88
TraesCS3A01G371800.1	Wheat	nucleus	30.81	16.62
TraesCS3B01G404600.1	Wheat	nucleus	30.33	16.54
TraesCS3B01G404400.1	Wheat	nucleus	30.33	16.37
KRH57716	Soybean	nucleus	25.12	16.26
TraesCS3B01G404200.1	Wheat	nucleus	29.86	16.15
TraesCS3D01G364900.1	Wheat	nucleus	29.86	16.15
KRH10463	Soybean	nucleus	9.95	16.15
TraesCS3B01G404300.1	Wheat	nucleus	29.86	16.11
KRG89815	Soybean	nucleus	20.85	16.06
KRH20056	Soybean	nucleus	36.97	15.79
TraesCS3A01G372200.1	Wheat	nucleus	28.44	15.71
KRH18666	Soybean	nucleus	20.38	15.47
TraesCS3A01G372000.1	Wheat	nucleus	27.96	15.4
HORVU3Hr1G084360.2	Barley	nucleus	30.81	15.37
TraesCS3D01G365500.1	Wheat	nucleus	27.49	15.14
TraesCS3B01G404500.1	Wheat	nucleus	27.96	15.09
KRH35126	Soybean	nucleus	17.54	14.98
TraesCS3A01G371900.3	Wheat	nucleus	27.01	14.92
KXG33733	Sorghum	nucleus	28.91	14.84
TraesCS3A01G372100.2	Wheat	nucleus	27.01	14.58
Zm00001d012296_P001	Maize	nucleus	28.44	14.56
KRH18840	Soybean	nucleus	18.48	14.44
KRH61298	Soybean	nucleus	27.96	14.15
Zm00001d042779_P001	Maize	nucleus	25.59	14.1
KRH42235	Soybean	nucleus, plastid	15.64	13.81
KRH43979	Soybean	nucleus	10.43	13.75
TraesCS3D01G365000.1	Wheat	nucleus	25.59	13.64
KRH58352	Soybean	nucleus	14.22	13.39
KRH50289	Soybean	nucleus	26.54	13.21
KRH71134	Soybean	nucleus	26.54	12.76
KRH52003	Soybean	nucleus	19.43	12.46
KRH16634	Soybean	mitochondrion	16.11	11.56
KRH26009	Soybean	nucleus, plastid	9.95	11.35
KRH52002	Soybean	cytosol	5.21	11.22

Protein Annotations

MapMan:15.5.4.1	UniProt:A0A0R0I5S7	EMBL:ACUP02005500	EnsemblPlantsGene:GLYMA_09G086700	GO:GO:0003674	GO:GO:0003700
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009719	GO:GO:0009737	GO:GO:0009987	GO:GO:0045893
EnsemblPlants:KRH37750	ProteinID:KRH37750	ProteinID:KRH37750.1	PANTHER:PTHR22952	PANTHER:PTHR22952:SF49	UniParc:UPI0006ED5A8B

Description

hypothetical protein

Coordinates

chr9:-:10809545..10810236

Molecular Weight (calculated)

23662.3 Da

IEP (calculated)

10.147

GRAVY (calculated)

-0.558

Length

211 amino acids

Sequence
(BLAST)

001: MDEFLSSIWN SDDNNQVNPP LPTLDEAAKG KSVVATKSTT ISQPLSIPPP ICKKIMDEIW SQIHKSQPHY NEANNSLVRN EPLLKRQQTL GEMTLEDFLV
101: KAGVVQESSS LFKSSLLYQN QIGNIASNGS LSASYRFRHV IGTRSIIKDV TTNGTVGKCP SLGESSGKGN RKRIIDGPPK VVVERRQRRM LKNRESATHY
201: IVFKDWLERQ L

Best Arabidopsis Sequence Match ( AT3G44460.1 )
(BLAST)

001: MSVFESETSN FHVYNNHEIQ TQPQMQTFLS EEEPVGRQNS ILSLTLDEIQ MKSGKSFGAM NMDEFLANLW TTVEENDNEG GGAHNDGEKP AVLPRQGSLS
101: LPVPLCKKTV DEVWLEIQNG VQQHPPSSNS GQNSAENIRR QQTLGEITLE DFLVKAGVVQ EPLKTTMRMS SSDFGYNPEF GVGLHCQNQN NYGDNRSVYS
201: ENRPFYSVLG ESSSCMTGNG RSNQYLTGLD AFRIKKRIID GPPEILMERR QRRMIKNRES AARSRARRQA YTVELELELN NLTEENTKLK EIVEENEKKR
301: RQEIISRSKQ VTKEKSGDKL RKIRRMASAG W

Arabidopsis Description

DPBF2ABSCISIC ACID-INSENSITIVE 5-like protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8RYD6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.