Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3B01G404400.1 | Wheat | nucleus | 95.4 | 95.4 |
| TraesCS3B01G404300.1 | Wheat | nucleus | 91.56 | 91.56 |
| TraesCS3B01G404200.1 | Wheat | nucleus | 90.03 | 90.26 |
| TraesCS3D01G364900.1 | Wheat | nucleus | 89.51 | 89.74 |
| TraesCS3B01G404600.1 | Wheat | nucleus | 87.21 | 88.11 |
| TraesCS3A01G371900.3 | Wheat | nucleus | 79.8 | 81.68 |
| TraesCS3D01G365500.1 | Wheat | nucleus | 79.28 | 80.94 |
| TraesCS3D01G365000.1 | Wheat | nucleus | 81.84 | 80.81 |
| TraesCS3A01G372200.1 | Wheat | nucleus | 76.73 | 78.53 |
| TraesCS3A01G372000.1 | Wheat | nucleus | 76.73 | 78.33 |
| TraesCS3A01G372100.2 | Wheat | nucleus | 77.49 | 77.49 |
| HORVU3Hr1G084360.2 | Barley | nucleus | 79.54 | 73.52 |
| Os01t0859300-01 | Rice | nucleus | 53.45 | 64.71 |
| KXG33733 | Sorghum | nucleus | 60.1 | 57.18 |
| Zm00001d012296_P001 | Maize | nucleus | 59.59 | 56.55 |
| Zm00001d042779_P001 | Maize | nucleus | 53.2 | 54.31 |
| GSMUA_Achr8P07740_001 | Banana | nucleus | 30.95 | 34.87 |
| CDX75056 | Canola | nucleus | 35.55 | 34.84 |
| CDX84141 | Canola | nucleus | 35.04 | 34.77 |
| KRG96191 | Soybean | nucleus | 34.27 | 34.63 |
| VIT_06s0080g00340.t01 | Wine grape | nucleus | 28.64 | 34.57 |
| KRH22688 | Soybean | nucleus | 29.41 | 34.23 |
| GSMUA_Achr3P22710_001 | Banana | nucleus | 30.18 | 33.62 |
| TraesCS7B01G075600.1 | Wheat | nucleus | 29.16 | 33.53 |
| AT3G44460.1 | Thale cress | nucleus | 28.13 | 33.23 |
| Bra017251.1-P | Field mustard | nucleus | 33.5 | 33.08 |
| VIT_08s0007g03420.t01 | Wine grape | nucleus | 33.5 | 32.75 |
| PGSC0003DMT400006851 | Potato | nucleus | 35.81 | 32.71 |
| CDY43738 | Canola | nucleus | 33.76 | 32.67 |
| Solyc09g009490.2.1 | Tomato | nucleus | 35.55 | 32.63 |
| TraesCS6B01G364000.1 | Wheat | nucleus | 29.16 | 32.48 |
| Bra005287.1-P | Field mustard | nucleus | 36.32 | 32.42 |
| TraesCS1B01G317100.1 | Wheat | nucleus | 26.6 | 32.3 |
| Bra019436.1-P | Field mustard | nucleus | 27.62 | 32.14 |
| CDY10500 | Canola | nucleus | 28.39 | 32.08 |
| TraesCS1B01G282800.1 | Wheat | nucleus | 20.46 | 31.75 |
| TraesCS4B01G175800.1 | Wheat | nucleus | 18.16 | 31.56 |
| CDY08701 | Canola | nucleus | 27.88 | 31.5 |
| TraesCS5B01G235600.2 | Wheat | nucleus | 29.41 | 31.42 |
| AT2G36270.3 | Thale cress | nucleus | 35.55 | 31.31 |
| TraesCS3B01G368300.1 | Wheat | nucleus | 27.11 | 30.9 |
| TraesCS3B01G411300.1 | Wheat | nucleus | 19.44 | 30.4 |
| TraesCS2B01G115700.1 | Wheat | nucleus | 21.23 | 30.29 |
| KRH32737 | Soybean | nucleus | 34.27 | 29.98 |
| TraesCS5B01G139800.1 | Wheat | nucleus | 22.51 | 28.11 |
| KRH37750 | Soybean | nucleus | 15.09 | 27.96 |
| KRH20056 | Soybean | nucleus | 35.04 | 27.73 |
| KRH26633 | Soybean | mitochondrion | 28.39 | 17.24 |
Protein Annotations
| Gene3D:1.20.5.170 | MapMan:15.5.4.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003700 | GO:GO:0006139 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR004827 |
| PFAM:PF07716 | ScanProsite:PS00036 | PFscan:PS50217 | PANTHER:PTHR22952 | PANTHER:PTHR22952:SF187 | SMART:SM00338 |
| SUPFAM:SSF57959 | EnsemblPlantsGene:TraesCS3B01G404500 | EnsemblPlants:TraesCS3B01G404500.1 | InterPro:bZIP | TIGR:cd14707 | SEG:seg |
Description
No Description!
Coordinates
chr3B:+:639553616..639555147
Molecular Weight (calculated)
41829.0 Da
IEP (calculated)
4.962
GRAVY (calculated)
-0.409
Length
391 amino acids
Sequence
(BLAST)
(BLAST)
001: MASEMSNDVK FSEEEVTSHP RVLEGEEQTV VAPARQSSIF ALTLDELQYS VCEAGRNFGS MNMDEFMSNI WNAEEFQAAT GGGLVGMEMA PVVGAGGGGG
101: GGDAGGSNLA RQESFSLPPT LCQKMVEEVW AEINREPCPV HAQRQAAQPS QQPPVQPSVA ANNRQGTLGE MTLEQFLVKA GMVRGSGAGG QAPVPVDMVH
201: GQMNPAQQGQ QPDTMMYPMA PANGMFPVMG DGMGFIPNVY AGIVVVPPPP PSQGGVGIVS PGSSDGRSAM TQADMMNCMG DGAMMESGGT RKRGASEDQS
301: CERSIECRHR RMIKNGESAA RSRARKQAFT VELEAELNHL KEENARLKAE EKIILLTKKQ MLVEKMIELS KENVNAKKGS TLSRRCGSCI W
101: GGDAGGSNLA RQESFSLPPT LCQKMVEEVW AEINREPCPV HAQRQAAQPS QQPPVQPSVA ANNRQGTLGE MTLEQFLVKA GMVRGSGAGG QAPVPVDMVH
201: GQMNPAQQGQ QPDTMMYPMA PANGMFPVMG DGMGFIPNVY AGIVVVPPPP PSQGGVGIVS PGSSDGRSAM TQADMMNCMG DGAMMESGGT RKRGASEDQS
301: CERSIECRHR RMIKNGESAA RSRARKQAFT VELEAELNHL KEENARLKAE EKIILLTKKQ MLVEKMIELS KENVNAKKGS TLSRRCGSCI W
001: MVTRETKLTS EREVESSMAQ ARHNGGGGGE NHPFTSLGRQ SSIYSLTLDE FQHALCENGK NFGSMNMDEF LVSIWNAEEN NNNQQQAAAA AGSHSVPANH
101: NGFNNNNNNG GEGGVGVFSG GSRGNEDANN KRGIANESSL PRQGSLTLPA PLCRKTVDEV WSEIHRGGGS GNGGDSNGRS SSSNGQNNAQ NGGETAARQP
201: TFGEMTLEDF LVKAGVVREH PTNPKPNPNP NQNQNPSSVI PAAAQQQLYG VFQGTGDPSF PGQAMGVGDP SGYAKRTGGG GYQQAPPVQA GVCYGGGVGF
301: GAGGQQMGMV GPLSPVSSDG LGHGQVDNIG GQYGVDMGGL RGRKRVVDGP VEKVVERRQR RMIKNRESAA RSRARKQAYT VELEAELNQL KEENAQLKHA
401: LAELERKRKQ QYFESLKSRA QPKLPKSNGR LRTLMRNPSC PL
101: NGFNNNNNNG GEGGVGVFSG GSRGNEDANN KRGIANESSL PRQGSLTLPA PLCRKTVDEV WSEIHRGGGS GNGGDSNGRS SSSNGQNNAQ NGGETAARQP
201: TFGEMTLEDF LVKAGVVREH PTNPKPNPNP NQNQNPSSVI PAAAQQQLYG VFQGTGDPSF PGQAMGVGDP SGYAKRTGGG GYQQAPPVQA GVCYGGGVGF
301: GAGGQQMGMV GPLSPVSSDG LGHGQVDNIG GQYGVDMGGL RGRKRVVDGP VEKVVERRQR RMIKNRESAA RSRARKQAYT VELEAELNQL KEENAQLKHA
401: LAELERKRKQ QYFESLKSRA QPKLPKSNGR LRTLMRNPSC PL
Arabidopsis Description
ABI5Basic-leucine zipper (bZIP) transcription factor family protein [Source:TAIR;Acc:AT2G36270]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.