CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG94206
KRG94991
KRH01286
KRH45047
KRH57716
KRH64894
KRH70923
KRH75067

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G44460.1	KRH70923	AT1G13740.1	18484180
AT3G44460.1	KRH75067	AT1G13740.1	18484180
AT3G44460.1	KRH70923	AT1G69260.1	18484180
AT3G44460.1	KRH75067	AT1G69260.1	18484180
AT3G44460.1	KRH01286	AT3G02140.1	18484180
AT3G44460.1	KRH45047	AT3G02140.1	18484180
AT3G44460.1	KRH01286	AT3G29575.1	18484180
AT3G44460.1	KRH45047	AT3G29575.1	18484180
AT3G44460.1	KRG94206	AT3G56850.1	21798944
AT3G44460.1	KRG94991	AT3G56850.1	21798944
AT3G44460.1	KRH57716	AT3G56850.1	21798944
AT3G44460.1	KRH64894	AT3G56850.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH37750	Soybean	nucleus	52.68	83.89
KRH26633	Soybean	mitochondrion	94.05	49.07
AT3G44460.1	Thale cress	nucleus	42.56	43.2
CDY08701	Canola	nucleus	40.77	39.6
CDY10500	Canola	nucleus	40.77	39.6
Bra019436.1-P	Field mustard	nucleus	39.29	39.29
KRG96191	Soybean	nucleus	41.96	36.43
VIT_06s0080g00340.t01	Wine grape	nucleus	35.12	36.42
KRH10463	Soybean	nucleus	13.39	34.62
Solyc09g009490.2.1	Tomato	nucleus	43.15	34.04
KRH13203	Soybean	nucleus	30.36	33.77
KRG89815	Soybean	nucleus	27.08	33.21
PGSC0003DMT400006851	Potato	nucleus	41.96	32.94
GSMUA_Achr8P07740_001	Banana	nucleus	33.93	32.85
KRH56272	Soybean	nucleus	30.65	32.59
KRH62689	Soybean	nucleus	30.06	31.96
KRH32737	Soybean	nucleus	41.96	31.54
KRH44714	Soybean	nucleus	30.06	31.27
Os01t0859300-01	Rice	nucleus	29.76	30.96
TraesCS3A01G371800.1	Wheat	nucleus	36.01	30.95
KRG94206	Soybean	nucleus	29.46	30.84
TraesCS3D01G364900.1	Wheat	nucleus	35.71	30.77
TraesCS3B01G404600.1	Wheat	nucleus	35.42	30.75
TraesCS3B01G404300.1	Wheat	nucleus	35.71	30.69
TraesCS3B01G404400.1	Wheat	nucleus	35.71	30.69
TraesCS3B01G404200.1	Wheat	nucleus	35.42	30.51
GSMUA_Achr3P22710_001	Banana	nucleus	31.25	29.91
KRH18666	Soybean	nucleus	24.7	29.86
KRH57716	Soybean	nucleus	28.87	29.75
KRH64894	Soybean	nucleus	27.68	29.43
TraesCS3B01G404500.1	Wheat	nucleus	34.23	29.41
KRG94991	Soybean	nucleus	27.98	29.38
KRH43979	Soybean	nucleus	13.99	29.38
TraesCS3A01G372000.1	Wheat	nucleus	33.04	28.98
KRH20056	Soybean	nucleus	42.26	28.74
KXG33733	Sorghum	nucleus	35.12	28.71
TraesCS3A01G372200.1	Wheat	nucleus	32.44	28.53
TraesCS3A01G371900.3	Wheat	nucleus	32.44	28.53
TraesCS3D01G365500.1	Wheat	nucleus	32.44	28.46
Zm00001d012296_P001	Maize	nucleus	33.93	27.67
TraesCS3A01G372100.2	Wheat	nucleus	32.14	27.62
HORVU3Hr1G084360.2	Barley	nucleus	34.52	27.42
Zm00001d042779_P001	Maize	nucleus	30.65	26.89
TraesCS3D01G365000.1	Wheat	nucleus	31.55	26.77
KRH52002	Soybean	cytosol	7.74	26.53
KRH35126	Soybean	nucleus	19.35	26.32
KRH61298	Soybean	nucleus	32.14	25.9
KRH42235	Soybean	nucleus, plastid	18.15	25.52
KRH58352	Soybean	nucleus	16.67	25.0
KRH50289	Soybean	nucleus	30.95	24.53
KRH71134	Soybean	nucleus	30.65	23.46
KRH52003	Soybean	nucleus	22.32	22.8
KRH18840	Soybean	nucleus	15.48	19.26
KRH16634	Soybean	mitochondrion	16.07	18.37
KRH26009	Soybean	nucleus, plastid	7.14	12.97

Protein Annotations

Gene3D:1.20.5.170	EntrezGene:100799576	MapMan:15.5.4.1	EMBL:ACUP02008425	ncoils:Coil	EnsemblPlantsGene:GLYMA_13G317000
GO:GO:0003674	GO:GO:0003700	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	InterPro:IPR004827	UniProt:K7M309	EnsemblPlants:KRH22688	ProteinID:KRH22688
ProteinID:KRH22688.1	PFAM:PF00170	ScanProsite:PS00036	PFscan:PS50217	PANTHER:PTHR22952	PANTHER:PTHR22952:SF49
SMART:SM00338	SUPFAM:SSF57959	UniParc:UPI000294A25B	InterPro:bZIP	SEG:seg	:

Description

hypothetical protein

Coordinates

chr13:-:41148922..41151182

Molecular Weight (calculated)

37342.3 Da

IEP (calculated)

9.445

GRAVY (calculated)

-0.748

Length

336 amino acids

Sequence
(BLAST)

001: MSLQQPNQEV PLQEPEATFS QLSKQNSILS LTLDEFYCKN GKSLGSMNMD EFLSSIWNSD DNNQVNPPLP TLDEAAKGKS VIATEPTTIS QPGSLSVPPP
101: ICKKTVDEVW SQIHKSQPDH NDANNSLARN EPLLKRQQTL GEMTLEDFLV KAGVVQESSS LFKSSLLPQN QIGNIASNGP LGAGYRLRPV IGTGSSVSCN
201: GLETQNMLAQ NNNLVVKDLT TNGAVEKCPS LGESNGKGNR KRIIDGPPEV VVERRQRRML KNRESAARSR ARRQAYTVEL EAELNLLKEE NEKLKQTLAE
301: AERKRKQEIS QRKHTTMAQK RTENLRAMRR PLSASW

Best Arabidopsis Sequence Match ( AT3G44460.1 )
(BLAST)

001: MSVFESETSN FHVYNNHEIQ TQPQMQTFLS EEEPVGRQNS ILSLTLDEIQ MKSGKSFGAM NMDEFLANLW TTVEENDNEG GGAHNDGEKP AVLPRQGSLS
101: LPVPLCKKTV DEVWLEIQNG VQQHPPSSNS GQNSAENIRR QQTLGEITLE DFLVKAGVVQ EPLKTTMRMS SSDFGYNPEF GVGLHCQNQN NYGDNRSVYS
201: ENRPFYSVLG ESSSCMTGNG RSNQYLTGLD AFRIKKRIID GPPEILMERR QRRMIKNRES AARSRARRQA YTVELELELN NLTEENTKLK EIVEENEKKR
301: RQEIISRSKQ VTKEKSGDKL RKIRRMASAG W

Arabidopsis Description

DPBF2ABSCISIC ACID-INSENSITIVE 5-like protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8RYD6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.