CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX67659
CDX72108
CDX74273
CDX76014
CDX85274
CDX86364
CDX91976
CDX95951
CDX98125
CDY00093
CDY04085
CDY04272
CDY07354
CDY16104
CDY19988
CDY25046
CDY27189
CDY33807
CDY36406
CDY40905
CDY43256
CDY44386
CDY47381
CDY50584
CDY51261
CDY68672

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G44460.1	CDX98125	AT1G13740.1	18484180
AT3G44460.1	CDY16104	AT1G13740.1	18484180
AT3G44460.1	CDY33807	AT1G13740.1	18484180
AT3G44460.1	CDY36406	AT1G13740.1	18484180
AT3G44460.1	CDY25046	AT1G48150.1	15805477
AT3G44460.1	CDY50584	AT1G48150.1	15805477
AT3G44460.1	CDX95951	AT1G69260.1	18484180
AT3G44460.1	CDY04272	AT1G69260.1	18484180
AT3G44460.1	CDY07354	AT1G69260.1	18484180
AT3G44460.1	CDY40905	AT1G69260.1	18484180
AT3G44460.1	CDX74273	AT3G02140.1	18484180
AT3G44460.1	CDX91976	AT3G02140.1	18484180
AT3G44460.1	CDY43256	AT3G02140.1	18484180
AT3G44460.1	CDY68672	AT3G02140.1	18484180
AT3G44460.1	CDX85274	AT3G29575.1	18484180
AT3G44460.1	CDX86364	AT3G29575.1	18484180
AT3G44460.1	CDY00093	AT3G29575.1	18484180
AT3G44460.1	CDY04085	AT3G29575.1	18484180
AT3G44460.1	CDY19988	AT3G29575.1	18484180
AT3G44460.1	CDY44386	AT3G29575.1	18484180
AT3G44460.1	CDX67659	AT3G56850.1	21798944
AT3G44460.1	CDX72108	AT3G56850.1	21798944
AT3G44460.1	CDX76014	AT3G56850.1	21798944
AT3G44460.1	CDY27189	AT3G56850.1	21798944
AT3G44460.1	CDY47381	AT3G56850.1	21798944
AT3G44460.1	CDY51261	AT3G56850.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra019436.1-P	Field mustard	nucleus	93.93	96.73
CDY10500	Canola	nucleus	95.95	95.95
AT3G44460.1	Thale cress	nucleus	77.46	80.97
KRH22688	Soybean	nucleus	39.6	40.77
VIT_06s0080g00340.t01	Wine grape	nucleus	34.39	36.73
CDX72108	Canola	nucleus	26.59	36.65
CDY27189	Canola	nucleus	26.01	36.44
CDY51261	Canola	nucleus	26.01	36.0
CDY53679	Canola	nucleus	28.03	35.4
CDY65560	Canola	nucleus	30.64	35.1
CDY28083	Canola	nucleus	23.99	35.02
CDX76014	Canola	nucleus	27.17	34.69
CDX79959	Canola	nucleus	27.75	34.04
CDY06946	Canola	nucleus	26.88	33.7
CDY57581	Canola	nucleus	26.3	33.46
GSMUA_Achr8P07740_001	Banana	nucleus	33.53	33.43
CDX67659	Canola	nucleus	24.86	33.2
CDY17109	Canola	nucleus	31.79	32.84
CDX84141	Canola	nucleus	37.28	32.74
CDY47381	Canola	nucleus	27.17	32.41
CDX75056	Canola	nucleus	37.28	32.33
KRH37750	Soybean	nucleus	19.65	32.23
CDY43738	Canola	nucleus	37.28	31.93
CDY51041	Canola	nucleus	29.77	31.21
Os01t0859300-01	Rice	nucleus	28.32	30.34
Solyc09g009490.2.1	Tomato	nucleus	36.99	30.05
TraesCS3D01G364900.1	Wheat	nucleus	33.81	30.0
PGSC0003DMT400006851	Potato	nucleus	36.99	29.91
CDY68227	Canola	nucleus	29.77	29.51
TraesCS3B01G404300.1	Wheat	nucleus	33.24	29.41
CDX69020	Canola	nucleus	29.48	29.14
GSMUA_Achr3P22710_001	Banana	nucleus	29.48	29.06
CDY18575	Canola	nucleus	29.48	28.98
TraesCS3B01G404600.1	Wheat	nucleus	32.37	28.94
TraesCS3A01G371800.1	Wheat	nucleus	32.66	28.9
CDX92320	Canola	nucleus	29.48	28.73
TraesCS3B01G404200.1	Wheat	nucleus	32.37	28.72
TraesCS3B01G404400.1	Wheat	nucleus	32.37	28.64
Zm00001d012296_P001	Maize	nucleus	34.1	28.64
CDY63041	Canola	nucleus	28.9	28.25
CDX99242	Canola	nucleus	28.9	28.25
KXG33733	Sorghum	nucleus	33.53	28.22
TraesCS3B01G404500.1	Wheat	nucleus	31.5	27.88
TraesCS3A01G371900.3	Wheat	nucleus	29.77	26.96
CDX82302	Canola	nucleus	28.32	26.92
TraesCS3A01G372000.1	Wheat	nucleus	29.77	26.89
Zm00001d042779_P001	Maize	nucleus	29.48	26.63
HORVU3Hr1G084360.2	Barley	nucleus	32.37	26.48
TraesCS3D01G365500.1	Wheat	nucleus	29.19	26.37
CDY58256	Canola	nucleus	29.48	26.09
TraesCS3A01G372200.1	Wheat	nucleus	28.61	25.92
TraesCS3A01G372100.2	Wheat	nucleus	29.19	25.83
CDX72445	Canola	nucleus	30.35	25.61
TraesCS3D01G365000.1	Wheat	nucleus	28.9	25.25
CDY22311	Canola	nucleus, plastid	17.92	23.31
CDY54481	Canola	nucleus	19.08	23.08
CDY18197	Canola	nucleus, plastid	17.34	22.3
CDX71528	Canola	nucleus	25.14	22.25
CDY22378	Canola	nucleus	25.14	22.03
CDX89852	Canola	nucleus, plastid	17.05	22.01
KRH26633	Soybean	mitochondrion	39.31	21.12

Protein Annotations

Gene3D:1.20.5.170	MapMan:15.5.4.1	GO:A0A078F5L6	UniProt:A0A078F5L6	EnsemblPlants:CDY08701	ProteinID:CDY08701
ProteinID:CDY08701.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003700	GO:GO:0006139	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00000614001	InterPro:IPR004827
PFAM:PF00170	ScanProsite:PS00036	PFscan:PS50217	PANTHER:PTHR22952	PANTHER:PTHR22952:SF119	SMART:SM00338
SUPFAM:SSF57959	UniParc:UPI0004EEBFBE	InterPro:bZIP	SEG:seg	:	:

Description

BnaC03g54810DBnaC03g54810D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F5L6]

Coordinates

chrLK031988:-:713472..715666

Molecular Weight (calculated)

39480.0 Da

IEP (calculated)

8.214

GRAVY (calculated)

-0.849

Length

346 amino acids

Sequence
(BLAST)

001: MHVHITRFIG LKTMPGLESE TSTFHVFNHD LQTQLQRYPQ ETAVEEHPPV GRQNSIMSLT LDEIQMKSGK SFGAMNMDEL LANMWMTVEE NNGGGAGAQQ
101: DGEKPTIVPR QGSLSVPVPL YKKTVEEVWF EIQNGVQQPP PSSIAGQNPD EDNRRQQTLG EITLEDFLVK AGVVQEPLKT TMKMSSSDFG YNPEFGVGLH
201: CQTQNNYGDN RTGFNENRPF YSGMGESSSC MTGKERSDQY LPGLNAFRIQ KRIIDGPPEI LMERRQRRMI KNRESAARSR ARRQAYTVEL ELELNQLTEE
301: NLKLKKIVEE NEKKRRQEVM NRSTQITKEK NGDKLRRIRR MASAGW

Best Arabidopsis Sequence Match ( AT3G44460.1 )
(BLAST)

001: MSVFESETSN FHVYNNHEIQ TQPQMQTFLS EEEPVGRQNS ILSLTLDEIQ MKSGKSFGAM NMDEFLANLW TTVEENDNEG GGAHNDGEKP AVLPRQGSLS
101: LPVPLCKKTV DEVWLEIQNG VQQHPPSSNS GQNSAENIRR QQTLGEITLE DFLVKAGVVQ EPLKTTMRMS SSDFGYNPEF GVGLHCQNQN NYGDNRSVYS
201: ENRPFYSVLG ESSSCMTGNG RSNQYLTGLD AFRIKKRIID GPPEILMERR QRRMIKNRES AARSRARRQA YTVELELELN NLTEENTKLK EIVEENEKKR
301: RQEIISRSKQ VTKEKSGDKL RKIRRMASAG W

Arabidopsis Description

DPBF2ABSCISIC ACID-INSENSITIVE 5-like protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8RYD6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.